GgaINT0012414 @ galGal3
Intron Retention
Gene
ENSGALG00000009208 | NET3_CHICK
Description
NA
Coordinates
chr14:14776530-14782217:-
Coord C1 exon
chr14:14782004-14782217
Coord A exon
chr14:14776719-14782003
Coord C2 exon
chr14:14776530-14776718
Length
5285 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GACACTCTGCTCCTTTGCAGCCT
3' ss Score
8.38
Exon sequences
Seq C1 exon
GCCACCCCCTACTACTACTCGGTGGGCGAGCTGCAGGTCGGCGGGCGCTGCAAGTGCAACGGGCACGCCTCGCGCTGCGTCAAGGACAAGGAGCAGAAGCTGGTGTGTGACTGCAAGCACAACACCGAGGGGCCCGAGTGCGACCGCTGCAAGCCCTTCCACTACGACCGGCCGTGGCAGCGGGCCAGCGCCCGCGAGGCCAACGAGTGCCTGG
Seq A exon
GTAAGTGCCCACCGTGCTGCCCATGGGGCAAGTCCAGGGGGAGGGGACACGGGGCTGAGCCGCAATGGGGACAGGTGTGAGCCTCTGCTGCCTGCGCCCCACAGGATGTGTGGGCTTGGCTGTGAGCACTCAGCCCCCACTAAAGGTACGAGGGTGTGTTTTGGGACATCAGCACGTGGGGGGAGTGGTGCCCACCAGAGCTGGTTGGGATAAGGCAGGGATGGGCACTGGGTTTGGTGCGGGCAGAGAAAACCTAGCAGGGTTTAAGGGAAGGTCCAAGCTTTCCATCATCATTCAGTCAGTCTGGCACGGTGCTGCATATGGTGGGTTCGGCTCACCTCTCCTCATAAAGCTCTATGCGGGTTAAAGGCAGTGTAACCTGAAGGAAACTTTTCACAAATATCGACCCCCCGTTGCTCGCCTGCCCAGCACTCAGTTCTGTTTCTTTGGGGTTTCTGTGAGGCTTTTGCCTTTTGTCCATGCAGCGTGGGGGATGCCAGAGCCCCACAAAGCCCTGGGAGAGGGAGGGACCGGCTCCTGCCCTGCCTGGACCCCCGCCCGGTCCCAGGGGGTGGCAGGATGGGGACAAGGGAACCACGCCATCAATCAGCCCCCGAATGGCCTGCTGGATGTGCCAGAGGTCAGGGGACCTGTTAGTGTTCGTGATCGATGGCTTGTTGAGATCCCAGCTGCTGGCTTCAATCTGTGTGTGTTAGAGAGGATTTCTTCCGGGGAAAAAAAAAAAAAAAGGCTAAAAGGGCTCAAAAAGCTAAAAAAGTCCACTGGTCCAAAGGGACGGCCTGAGCCGTTCTGCAAAGCACCTCACGCCCCATGGGAGTGGGTTAGCCCTGATGATTTTGGAGCAAAATTTGGAGGAGGACCAAAAGGAGGACCCCGACCCAGCAGCCCCTCCGCCCCGTGCTGCGCCGTGCCCCTCGCTCAGCCCTGCGGACGGGTGAGCAGAGGAGACCGAAGGGCCTCCCCCAGCCGGGCATCCCTTCTGGCAGATGAGGCTGAAAAGATAAACGAGGGAGAGAAAAGAAGAGCAGGGAGGAGGCGGGGGCACGGAGCGGTCCCTTCAAGACACCCTGACAAACCCCGCACACAAAGGCCCGTAGCCAAGCTGCGTGTGAAAGTGGTTTTTCCTGTTGATTCGATCCCCTTCTTTCTCCCTTTTCCCTCTCGGGCTTTGTGCCCTCTCTGAAGGGACCTGAAAGAGCTCCTCCATCACACGCCTCCGAAGGGCTTAGCGGCTGAAAGCTGGATTAGATCCCCGAGCCTTCCCCTCTGTGCCTTTCAACAATGACATCTCCCCAGCCAGCGCGAACAGACGCAGCAAAAAGGACCAATTAAAAGGAGAGGCCGCCCGGGAAGTTCCCTAAGGGAGTCCAGGCTGTGGGGTTTCCGACTCCGTCCCACGCCCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATTCCCCTCTCCTTATTCGTCCCTTCTGTCCCCTTCTTGTGTATGTTTTCCTTAAATTCTCTCAGTGCTCCTGATGCAGAATTCCTTCAGACCTCCCCCTTTTAAGCCCAGTGAGCCGACCCGGCCTCCTTTAGACTGGTGCCAGGCAGGACGTGGCTCTGGGAGGTGGTGAGCAGGGCAGAGGACACCCCCCGCCAGCATCCTCTGTCCCCAGCGGCTGTGGGGCACTGGGTGAGCCGGGGCCTGGGGTCTGCCTGCAACAGAGGGCATTAGTGCTCAGCTGGGAGCCCCGAGCCCTACTCCTGGGATGGGCTGCGGTGGCTCAGCCTCATGCCATCCTCAGTGTGGGCTCACAGGCCCTGGGGCGCTTGCTGGCAGCCGGCTGGAGAGCGGGGCTGCTGTGAGGCAGTGTCATTCCAGCCGTGCCACCCCATCCCCGTCCCCATCGCTGTCCCACAGAGGCAGGGAACGGTCCATGTGTTGGCACTGGGCGCAGGGGCTCTCCTGCCCCACTCCTCTCCGGGGCTGAGGTGCAGCCGTCCCGCCTCGCCTCCCGGCTGGGCTCCCCTCCAGCCAAAGCAGGGGCGTAGCTCGAATCCGCTGCGGGTTGGCAGCGGCAGCCAGTCTAGGGTTTCGCTGAGCCAGCTCCATTAACTAATCACTCCCAGGGAGCTCGTGGGTGCGGCGAACCCCCTCATGTCCTGCTGGCACCAGCATCTGCTGCACGTGTGCTCCCCACGCACGATGCTGCCCGTCCTGTGTCCCCCAGGGGGTCCCCAGCCCTGCACCTCTCCCACCATCACCTCACTGCTGACCCATGGGGAGCTGTGGGGAGGAGGTATTGGGGTAGCCAAAGTCCGGGCAGGGGTTCAAAGCCTTGAAAAGGGGGACAGGCGGCGGCCCCATTTCAAGGTGTTGATGTTTAATTAGTCTATTATCGCAAATTATTAGATCTTGTGATTGTTTAATTGATCATATGATTGTTTAATTGGGCATACTGTACAAGGGCAGAAGCAAACCGCCACGTAATTAGCCCCAAACTGTGCAATTAAATTCTTATTAATACCCCAAACAGCAGGGAGCATTCAAGCCTTTAATTAGTGATTAACAGGAGACAGACAGAGCTTGCAATCAAGTCGGCTCTGAGAACAGCACAAGCATTTAGCAGTGCGAGAGGGACCGTCCGCTCCGATTAGCACTGCATGCCCAGGAGTGCAGCGCCTCTCATGTGCCACACTGTGACCCTGTCCCCATCCCAGCACGGCCAAGCCTGGCCGAATCCTCACACTGAGGTCCCCGTGATGGCCAACATCACCCTGGTGCCCACAGAGCAGCTCTCAGTGCTGGGACAGTGCTATGGCTGTGCAGGGGTGGCCCTGGGGCTGGTGGGGACATGCCACACAGCGGCAGGGCAGCGAGCCAGCCCCTGGCCCTGCTTCAATGCCACAGAAAGGCCGGGCTAGTTACTCCATCACCAATTAAACTGGGGCAGAGAGGGACCTGTGACGGCCGAGGTGAATCATTTACCTGATCTTCCACCTCCACTGCCCTCATGTCCCTTCTGCTTCCCAGAGGATGCAGGAGCTTGCAGGGGCCCAGGATTTCTCCTTCTGAGTGAGCAAGGCAAAAATAGTGTCCCTTTGCCCCCAGAATCATTCCCTTGCAGGTGCCTCTGCTCAGCAGCACAAGCCACCCAGGCCAGCTAGTCCCCAGCCTGGGGACAGAACAGCAGCCCGTGCTCTGGTGCTGGCCCTGCACAGAGCCTGGCAGAGCAGCTGCATCCCTGCTGCATCCCATCCCTGCTGCACCACATCCCTGCTGCACCACATCCCTGCTGCACCACATCCCGCTGCACCGCATCCCCACTGTGCCCACTGCATCACTGTTATCCCAGTCGGGAAGTGGGATTTGGTCCATTCCTGGTGCACCAAGTCAACAAGCACACTGAGCTGGGGCCCCCATGAAGGTCTTTGTTTAATTCTGCACAGAATCAGGCATTTGCTTCCTGAATGTACTAACTCCTGAGTGGGTAACAACTGGGGTAACGTCCCCATCACTCCAGCACCACCCCTGCTATACCAATACCACCCCCACCGTGCCAACACCATTCCCACCATGCTGACACCATCCCATTCTTCCAACACCATCCCTGCCACGCAGCTGCATCCTCACCACCCAGCAAAATCCTTTAGGCACCACATCCCACTGTCCAGCCAAACGTGGCAGTTCTCCCCACCAGCACCAGTAAAGAGTGAGCTCAGAAGGCACAGACCCCGGGATGCACCCACCGCCCAATGGAGTGTTGGTGTTGTGCCTGCCCTGGGATTTCTACACTAATCTCATAATGTGAGGGAGCCGAGGGTGGGGTGTGTGGGGCCACGTGGGAGTTGGAAGCAGGCTGGGCTGCTCCGAGGGGCTCCGGGTTTGGGGTGTGCTGCTGCTGTCCCCACACGACGCCAGGACTGTTTGATCTGCACTGGCTGAGGCTCCCAGTGTGCTCCTGGGCGACCCGGGGAGGGGGGGGGGGTGAGAGGGGGAAACTTCACACAAACGACAAGCAGGCCCAGCAGTTAAATCTGGGCTGACATGTTAATGAATTTCACAGTACGCCTGGAAAAACTCTCACCCAGCCTCAATTTACCAGCACGGGGAGGGGGCTGGGGGCGGGCGCTGTGTTTTGCCAAAGGAAATCTTGTTCCCATTATCTTTTTGCAAGAGTGTTAAACAGGAACTGGCACCGCTTTTCCTTTTTATCTCGCACACGTGGAACCGGGCGGGGGGGTCTTCTCAGTTCCTGTGGCTAATGAAAGAAATAGCGTGTGTGTTTACATCGCTGTGCACGTGGGGGGGGGGGCGCGTGCATGCATCTCTGTGTGTATTTGTGCATATGTGTACCACTGTACAGATATGAACATGCATGCTTGGGCACGTGCTTCTGACGTGACCGTACATGCACACGCGTGAACACACGTGAGAGTGCATACATACTTCTGCACATTTGTGCATGCGTGTGTCACTGTGGGCTTCTGAGTGCGTGTGTGCAGAGCAGAGCCTTAACTAAGAGCAGTTTGGGGGCTGTGCTGCTGGCACTGAGGCTGACAGCCTGTGGGGCAGCAGGTTGCAGGTGCCTGGATGGTGCTGCCCGGCCAACACTGCTGCCCCCCCATCCCCTCCCTGGCTGCACCCCTCTGTCTTGCCTTTGGCTGAGCAGCCCCATGCTCCATGCCCACACCCACCCATTCTCCTCCTCACTGACCTCCAGCCCTGGCCCCTTTGGGAGGCAGACGCTGCACATGTGGATGGCACACTGGGGCTGGCTGCGCCGAGCTCTGCCCACACCGCTCCTCACCTCTGTGGTGCTGCTGGGGTCGGTGCAGACCCACAGCCCAGCATTTCAGCAGCACTGCCACCTCCAGCCATGTTCTCCTCCTTTCTGGCCCTGCACCCGGAGCCCCTCTGTGGGGTCCACACTGTGCACCTGGCATGGGTTTACCCCTCCTGTTTCCCTGTTCATGTGCTCAGGCAGTGCTGGTGCAGCAGAATCCCAGCAGACCACGAGCCCCAGCTTTTAGGACTCCACGGGGTAAAAGCCATGCCTGCGTGTTTGTGTGGACGGAGAGGGGACCGTGGAGCACAGAGAGCACTGTGCCTGACCCCACCAACTGGCACACGCGTTGATGGTGAGCTGCCCCTGCTGACACTCTGCTCCTTTGCAG
Seq C2 exon
CCTGCAACTGCAACCTGCACGCTCGGCGCTGCCGCTTCAACATGGAGCTGTATAAGCTGTCCGGCAGGAAGAGCGGCGGCGTTTGCCTCAACTGCCGACACAACACGGCTGGGAGGCACTGCCACTACTGCAAGGAGGGCTTCTACCGGGACCTCAGCAAGTCCATCACGGACCGCAAGGCCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009208:ENSGALT00000014992:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=75.0)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]