GgaINT0012418 @ galGal4
Intron Retention
Gene
ENSGALG00000029072 | NTN3
Description
netrin-3 precursor [Source:RefSeq peptide;Acc:NP_001264534]
Coordinates
chr14:14014723-14017788:-
Coord C1 exon
chr14:14017714-14017788
Coord A exon
chr14:14017625-14017713
Coord C2 exon
chr14:14014723-14017624
Length
89 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
CTCTCCCTCTTTTCCCTCAGTGG
3' ss Score
10.56
Exon sequences
Seq C1 exon
ACTGTGACTCCTACTGCAAGCCAGCCAAAGGCAACTACAAGATTAACATGAAGAAGTACTGCAAGAAGGATTACG
Seq A exon
GTAAGGCTGCCCTGCGTCCCCAGGGACGGCGGTTCCATCAGGAGCTGGCAGAGCATCCCCATCACCTTCCTCTCCCTCTTTTCCCTCAG
Seq C2 exon
TGGTCCAAGTGAACATTTTGGAAATGGAGACGGTGGCCAACTGGGCCAAGTTCACCATCAACATCCTCTCTGTCTACAAGTGCCGCGACGAGCGGGTCAAGCGCGGAGACAACTTCTTGTGGATCCACCTCAAGGACCTGTCCTGCAAGTGCCCCAAAATCCAGATCAGCAAGAAGTACCTGGTGATGGGCATCAGCGAGAACTCCACCGACCGGCCGGGACTGATGGCCGACAAGAACAGCCTGGTCATCCAGTGGAGGGACGCCTGGACTCGCCGCCTTCGGAAACTGCAGCGGAGGGAGAAGAAAGGGAAGTGTGTGAAGCCCTGAGGGCCTCGTGCCCCACGCGGGTCCCGGCCCCACTGCACACGCAGACCATGCCCAGAGACTCTGTACATACATATCGTGTGAACGGACTCTTCTGTCTATAGTGTATATTTTGGCAACGGTTCCCCTTTTTGTGTGCGTGTGCACGCGTGGGTGTGTGCACGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCTCTCAGTGTGTATTAAAAATAAGGCGGTAATGACAAACCTTTAATGAGGAGCAAAGCAGAGGGGGTCCTGTGGGTGCCTGCTGCCTGAAGGAGCTTGAGGGGCTGGTTTCTTGCTCCGGGCGTGCTGTTCCTCACCCTTCTGTCCTACTCTCTCTTTCCCCTTGAGCAAAACCTTCTGCCCAGTGCTGCTGTCTGAGCTCGCGGCTCTCCCTGCTGCAGAGCCCGGTCCCTCTCACGTGCTGCACATGTGCTGCTCTCAGCTCTCTGTGCCCCTTTTCTTGTGCAGCAGAGACGGGAGGTCGGTTTCCTCCATCCCGCTGCACACACGGACCGGCTGGGTGGAGACCATCCAGCGCTGCAGGACCGGCCCCAGGAGCTCCGCTGGGAGAACCAAGTGACCTTTCTCCAGGCCTGATCCTGCAGGACCTCAGCTTTACATGGACTGGTGCTGCCGCCCAGGGGCAGGGCCCATGGAAGTCTTGGGGACAGCCAGGGCTGTTGGCCACCACCCCACAGAGCTGTTCTGAGCAGGGCGCAGGGGTCTGCCTGTCCTGGTGCGTGGTCCAGGTGACCCATCAGGAAAGACCTGCAGATACCCATATTCTCCTCTCGTGCCAGCTCTGCATGCTGCTGTGACCTTGGCCGTGCCAGAGGTGCAGAGGCAGAGGTGGCAGGAAGAGAGGAGAGCTTTCGCTGACCAACCTCCAGTCTTTCATTTCTTCTGCATACTGTATTAGTCTCCAGTTCAAACAGACATCAGTTTCTTTCCACGTTGAGGTTATAGTGGTCTCGATGTAATAAACATGAATGGAAATAATAGTTGATCTGACAATAGATATTCCTTTCCATACAAACCTTGCCTGTTTAGGAAGGCTGTGAGGCTCAGCAAGGTGTTGCAGCCTGTGCTGCAGTCCCCTCGTGTGTTAGGAGGATGCTTTGGCCTTCCGAGCCCATCACATTGCGAGCGGCCACCCCATCCCAGGGGTGTCTGCAGCAGAGGCACAGCCCTGGGGGATCAGATCAGGGGAGTTTGGGGAGCGAGGATCTACGCACTTGGAGAAGCTGCTGAAGATACCAATGATTGCTTTTCAGAGACACATGGGGCCAGCAGTGCTGTCCCTCTGGCTCTGCGGATGCTACAGTCCTCTTGCAGGGCATGGGTAGAACTGGAGTAGCAGAGGGGCAAAGCACGAGTTGGGACCGTGTGGTTTTGGATGAGTTGCTCCTGTGCTATACTTCCAGCTCAGAGCTTCCTTCCCTGCTCTGGACGAGTCGAAGGGACTCTCCCATTCCTAGTGCTGCTTGTTCTGGTTGTCACAGGCCATCAACCTCTGCCACAAAATGTCCCTTGAACTACTCAGACCCCCAGCCCTCCTTTTCCTCGCTGCTGCCTGCACCCAGCAACCCCCAGCTGACCACATAGCTGCATGTTGGAGCCAGGCAGAGGCACCCTCAGCTGTGCATGGAGGGACTCCTGTTGGGGTCACTCACCGGTTGGGCTCAGCATTGCCCCGGGGTGCACTGGGATCTGCCGGGCCCTCTCCTCCTCAGCCGCAGCTGTTGAAGAGCAGCAGAGCATGAATGCTGCCTGGGACAGGACTGCAGAAGGAGCATGCAACCTCCAAGCACGCACAGCCTCGGGCAGAGGTGTGAAGATCCCATGCTCCCCAAAATCCACTCCACACATACTGCGGGACAGGAGGCTGCAGGTTTTCCTTTGGCAGCGGGACAAGAGGCTGCAGGTTTTCCTTTGGCACCTGTCTCCTCTTTCTCCTCTTCACCTGAAGTCAGCTCCTAAAGCTCTGGGAGGACTTTGGTGTTGGCAGCTGCTGTGTGGGATTTACCCTGCCCTCAGTGCAGCCCCCAGGACCAGTGATCCCAGCAGTGTCTCACATGCATCCTGCTGGGGCCCTGCACCGTGCAGCCCAGCATCACTGCACAGCTGCCATCACATTAACCAGAGCTGGGCACCAGCTGCAGGCAGGGACCCACATCTGGGGGTCCAGCAGTGCTGCTGGGGGTGCTCCGAGATGTATGTGTAACTCCCCCGTGTCTGCATGCCTTTTTGTCACCGCTTCCCATTTGCTTTATAACTGTAGCATATCACCAGGTGAAGCAGACCCAGGAGGCTGGCAGGATCATTTTGGGGATCCCTATGTGGGTTGGGGGGCTCTGCTGGGCTTTCTGGTCTGCTGAGATGTGCAATATATGTACCAACTGGGGCACCCATGAAAGCCGTGTCAAATATGTACAAAGAAAAGCCAGCGGATGCTATGGACCACAGTGTAACATATATATGTACGTTTGTTTTTATTATTATTTTATTATTATTATTATTATTAATAACATGAGTCTAATAAGTATCGACTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029072:ENSGALT00000045108:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.5=30.8)
A:
NA
C2:
PF0175916=NTR=PD(91.6=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGCAAGCCAGCCAAAGG
R:
AAGAAGTTGTCTCCGCGCTTG
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]