RnoINT0103702 @ rn6
Intron Retention
Gene
ENSRNOG00000006970 | Ntn3
Description
netrin 3 [Source:RGD Symbol;Acc:619811]
Coordinates
chr10:13577725-13578558:-
Coord C1 exon
chr10:13578484-13578558
Coord A exon
chr10:13578218-13578483
Coord C2 exon
chr10:13577725-13578217
Length
266 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGC
5' ss Score
7.42
3' ss Seq
CGCCCCCCCTCCCCTCGCAGCGG
3' ss Score
11.96
Exon sequences
Seq C1 exon
ACTGTGAGTCACATTGCAGACCTGCGCGTGGCAGTTACCGAATCAGCCTGAAGAAGTTCTGCCGAAAGGACTATG
Seq A exon
GTAGGCTGCCACACCCTAGCCCTTCCATCTCGCCCCCAACTCCTTTGAATACCTTGACCCTGGCTGTACCTCAAGGCTCTTTCTTTCCTCGGGTCTCTCACTGATGCGGGCTTTGGCAGCTGTGTCTTCAATGTACCTCCCTCTAGTGGGTGGCCTCTTCATGTCTTTCCTAAGCCACTTGGACACTCTATACTTCTCTACACAGTCCCCTCCGGCCCTGCCCCACCTAACCTGATCGCTTTTCCACGCCCCCCCTCCCCTCGCAG
Seq C2 exon
CGGTGCAAGTGGCAGTGGGTGCGCGCGGCGAGGCCCGCGGCGCGTGGACACGCTTTCCGGTAGCGGTGCTTGCTGTGTTCCGCAGCGGCGAGGAGCGCGCTCGGCGCGGGAGCAGCGCGCTGTGGGTACCAACCCTAGATGCGGCTTGCGGTTGCCCGCGCCTCCAGCCCGGCCGGCGCTACTTGCTGCTGGGAGATGGGCCCGGGGCTGCAGCTGGGAGCCCAGCAGGCCGGGGACCGGGGCTCAGTGCTGCCCGTGGAAGTCTCGTGCTGCCTTGGAGGGACGCCTGGACTCGGCGCCTGCGGAGGCTGCAGAGGAGAGAGCGGCGGGGGCGCTGCGGGACCGCTTGAACCTGCAAGCTGGGCGTGGACTGGGCGGGCTCAGTTCTCTTATCACTGGGCGCGGCGCGTTCAACAGAGCATTAGCCTGCTGGAAGTGTCACGTGCATCGCCATCTAATTTCCCCCATCCCCATACCCGCTTGAAACTTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006970:ENSRNOT00000009735:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.0=30.8)
A:
NA
C2:
PF0175916=NTR=PD(92.1=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAAGAAGTTCTGCCGAA
R:
CAAGGCAGCACGAGACTTCC
Band lengths:
307-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]