BtaINT0104236 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012137 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:HGNC:8029]
Coordinates
chr19:29254471-29269338:+
Coord C1 exon
chr19:29254471-29254545
Coord A exon
chr19:29254546-29269009
Coord C2 exon
chr19:29269010-29269338
Length
14464 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTGCCTGTGCTTCCTTGCAGCCG
3' ss Score
11.17
Exon sequences
Seq C1 exon
ACTGTGATTCCTACTGCAAGGCCTCCAAAGGGAAGCTGAAGATTAACATGAAAAAATACTGCAAGAAGGACTATG
Seq A exon
GTGAGTGAGAGCCCCCTTGTTGGGGGAGGGGGAGGGCACCATGTGACCAGTGGGGTGCAGGGGGCCCTGCGTGGGTGTTAGTCCCAGAGTCCCTGTGACTGGCCAGGAGCTGAGGGGGATGGATCTTGTGCCTGGGAATTTCCCAGCTCTTCCTCCTTGGGGTGGGGGAGCGGTAGCCACAGGTATGGGGACTGCGTTCTCCCCCGGCCCTGCATCCTGGCCACTGGGGGGTCCTGGGCTTCACTCTGCCTCTGAGGGGCTGTGTGGCTGCAAATCAGTTGCTTTACCTCTCTGGTCTTCTGTGCCCTCATCCGTACTCATGGGCATTCAGCCTGAGGCTCTGTAGCTCAAAGAGAAGTCTTTCAGGTATTGGAGAAAGGAAGAGAGCTCTGTGGTGTATTTAAAATGCCGATTTGAGGGTTGACTCCACAAAACAGACCTCCAGGGATGGGTGGAGAATCTGCATTTTAAACTGCTTGCTGGTAATTCTGATGCACCAGAAGTTTGACCAGAGCCTCAGGGATCACTGAGGGCCTTTTCCGTTGGGAGCTGGGGCCTGCATAGACTCTCTGCACTGCAGGCCTCAGGCTCCCTTCCGGGGAAGAGTATCCCACCTGCCAGTCTCTCATGCAGCATCTACCCCAGCGCCCTGGAGGCCGGGGCCTTGCACCTCTCCTTTGTCAGGCTCTCCTCTGCCGCCTTCCATCAGCTCTGCCCCGTGGGAGCGGGGCACCGGCTCTGTGGTTTCTGGTCCCTGAGCTGGCTGGCGGCCTGGGCTGGCCAGACCTCACGGGACTCAGGGTCAAGGCTGACTTCAGGGTGGGTGGGGGCCTGCGGGAGAAGAGGAGCCCCTCACAGCCCCTGGGCAGGTGTCTGCAGATAGCTCAGAGGCAAACAGAAATCCCAAGCAGATGGTCCAGCTGTCTGCTGGCGGAGCTGGGGAGGCCCAGGGTATGGAGGTCAAGGTGTTCGACACTCAGGCAGGAGGTAGCTGCAGCCTGGGCACCCATCCAGTGGGCCTGGTCTTTCCACTCTGTGGCTCTCCTCCTGACCCGGTGGGCCTGGCTATTTCGGGCTGAGGCTGGGCCCCCTCTTCCTGGACCCGAAAGTCGACTCTGCCCATCTCCCCGCGTACCTCCCCGCTCCAGCTGGGTGTTCCTGGTCTTGCTGCTCTGTTCCTCAGCAGTCCTGCCCCTTTTAGCATCACCCGGCCGCCTCCAGGGAAAGGCCAGCGACCTGTGTTTTCTGCCCATCTTTCCTAGTCTGCCCTGATCGGGTGCCTCCTGAGGGACCTGGGGCAAGTCCGGTTGCATGTCTGAGTTGCGGTTTCCTTGTCTGGCATGTGGGGGTGATGCCCGACTGTGTCATATGGAAGCACTCAGCATGGGGCCAGGTGCCTGGTGGGCTCCTGGTAAAGATGGCTGGTCCCCTAGCAGCTGGGTGACAGGGCAGGAAGAAGTGGGCTGGGGAGGGAACAGTGACCCGGTGCTGAGGCCTCATTGTCCACAACCTGCATGGTGTCCCTCCCAGACCCCGGGGGTTCTGGCAACCTGGCCTGGACGCCAGGCCTTTGGGGTCTCATTGGGGCAGCTGTTTGAACCAAATGCAAGGTGTCCTTCTTTAATAAGGACAATGGCCAGGACCTTTTAGCAAAGGGAAGAGAAAGGCCCAAAGGAACCCAAAGGAATGTTGAGAACTTCTAAAACTTCCTCATTTTATTGTGCACACACATGTGTCTGTGTGTGCATATACAGGCATACGTGTACACACAGGTACGTGCGCACACACCCCACACGGAAGCCCAGTACACGATCGTACTGGAGCAGCTGGTAGGTTTTGTGCATCTGTTCTGAAGCAGCCAGGCCCTGGGTCCATAGCGAATTCCTGAAAAGAAGCCCCTTTAAAGTGCTTGTATCCCAAGGCAACTTTCACAGGAAAAACCAACCGTGATTTTGGTAACAAACTTTGGGGTGATTTAAGGATAAAGGAAGTGCTGTCTCTGACCCAGGGTGACAGTAGCCAAAGAGGCCCCGGTGGTTTGGGGTGAGGCTTGGGTGACCCTGTGCTCCCAACCCCGAGCTATCAGAGTCTGCTGGGGATGGCAAGGTGGGATGTGGGCAAGAAGGCCCAAGGTCCTGTGGTGTCCCAGGCTTAGGGCTGGGGGCCACGTGGGGATGCCCAGGGTCAGAGAGCCAGGGTCACAGAGGAGACCCCTGGCCTGTCACTCTGCCACCCCTTATCTCCCTCCCCCACAGAGAACAGGAGGAAGGAGCAGCTTGGCCACCTGGGGGAAGGGTGGGTTTAATTTCAGTGTGGAGCATCCTCTAAGCAGACAGACGCTGGGGAGACTTTCTGTGAAGGGTTAACCACCACCCCCATTCTGTTCCTCCAATGAGAAAAGGGAAAATTGGACTTTTTAAAAAAATTACCCAATGGATCCGTTTTCCACCTGGTTCTCTAGGACTTGTTTTGTTCTCTTCTGACTTCTTTTCCTCCATTGAATTCTGCCTTCCCCACCCCTGATACTTCCGGGGGCACTTTGGCTCCCTCTGACTCTCCTGCCCACTCCTCAGCAGCAGGCAGGCCCCTATCTCTGCAGAAGGGGGCCTGGCTCCCTCCTGTTATAGACCCAGGGGGTGTGCCCTGAGCCGTGCCTTGGCTTTGCGCCACCCCACCAACCCTGGGCAACAGGGCTGTGCGTGGGGAGTGGGGACTCAGTCTCTGAGCTCTTCTTGCCTTTTGCTCCCTGACTTGGTCCTCCCTTCCTCGCTGTTGACTTCCTCCTGGATTGTCCAAGGAAAGCTGGTGTCCTAGGTGGGGTCCTGGTCCGGCTGGCTGACTGGCCCAGCAGAGCCCCAGCCTCCCTCCTGCCCCCTCATCACGTTGATCTCCTGGACCCCATCCGTCCCAAAACCAAGAAAGTGAAAGTTGCTCAGTCGTGTCCAGCTCTTTGCAACCCCACGGACTATACAGTCCATGGAATTCTCCAGGCCAGAGTACTGAAGTGGGTAGCCATTCCCTTCTCTAGGGGATCTTCCCAACCCAAGGATCGAACCCAGGTCTTCCTAGACTTCACCTCAGCCACCCCAGCTCCTGGCCCCACACTACTGCCAGCCCACTGCCCAGGTGTCCACATTTCTGCTGCCAGGCAAGATTTGAGGAACCGCAGAGTCAGGAGAGAAGCGGGGTGCCCCCTTAGGGTGCTGACGAGGTCTGGAGCATGGCACCCTCAGCTTTAAGGTCCTCATCCCCATACCCTGGCCTGGAGGCCTGGACTGGCACTGCTCCTCCCATCCCCCAAAGGGTCCCCCGCACTGTCCATAACACTCTTGGGGTTACCTGAGTGTTGGGGAGCAGCCCGCCCGGCTGGATACCCAGGCCTGAGTGTTCAGGCTGGAGGCAGGACAAGGAAGTGTCAAAAGTGGGGGTTGGAGGGGCTTCTGGGGAGGGAGACCCCAGGAGAGGCTTGTGGAGGGCGGAGTGAGTGGCACCCCCGGTGGCTGGGCGGGGGCAGCCGGGCCTTGCTCTGAGGCAGGCCAGGTCTCCCTCTGGGCTCTGCACGCCTGGCCCCTGGCCGGGCCCCTGGAGGAGGGGTCCCTTCCACACCCGCAGACCTGGGTCAGGTGAGCAGGAGGAGGGGGCAAGGGGAGTTGGCTGGCCTGGGGTGGGGCGGGGGTGCAGGTGGGCCCAGGAGGATGGGGAGGGGGCTGCATAATCCCCACCCCGTCTCTGACTGACACCTCTGCAGGGAGCCAATTAGGAAACGCATTTCCTCTACTTTCCAGCTTTCCAGCTAGGGCACTTGGATGTTCCAGAAGCTGCTAATTAGAACCTCAGCAGGGTGCGTGGGGTGGAAGTCAGTGAAGGGCAGGCCCCAGGCCCCCTTCCTCCTCTGAGGCCAGCTCAGGAGATTCTTGACATTGTGCAGCCGGGACACCCGGATCTGGGTCTCCACCAACCCACCTGGATCTGGGTCTCTGCTGACCCGGGCGGTGGCCAGTGGGCAGGAGGCCGTGGGGAAGGGGGCTGGAGCAGTGGCTTGGGCTGGTTGGGGTCTGCTGGTCCTGCCTGTGTTCCTGGTGAGAGAGGACCCAGCAGGTGAGGGTGGGTGCCACACGAAGCAGGTAGGAATTGGGGTTGGGGAGGCGTGAGGGCCAAGCCCCATGCCTTTCTGGTCTGGAGAGACCCCAGGACCAGAAGGATGGCAGTTCCATTCCCATCTGTAGGTAGGGAAGGGCCACTGCCACAGAACCTGAAGAAGACTCCACGTTCGCTGTGTGACTTTGGACCAGGCTGGGCCTCAGTTTCCTGGTCTGTCCAGTGGAGGTCGATGAAGGGATGCGCTGGCCTTCCAGGTGTGGCAGGAGGGTGGCCCTGTTGCCATCTCCAAGGAGCAGGGAGGGGTTCATGGCGCCGCTGTCATCGCTGGCCCCCCCACCCCGTCCCGGGGCCACCTCAGTCCTCTGTTGCCCTCTAGGGGAATCGGCTCACCTTGCAAATGCTGAGAAGGCACCCGTGGGCAGGCTCAGGGTGGGGCAGTTGTGCACAAAGATGGGGGTTTTTATTATTTTCGAGTGTGGTAGCATTTCCTGTCAACTTCTCAGGAAAACCTAGCCGAGAGGGGCCCTTCTTTTGTGTAGAACGCTCCCAGTGAGTGTGTGTATGTGCGGAGATGTGTGCCTGTATGCACCCACGAGCATTCCCCATGAAGCCCGCATTCACTCAGCGGCTCCCACATGGGCAGAACGTGTCCATCCCTTCTGGAGTCACTGGCTCTGTGGCTCATTTACCTAGAAGCCCGGGTTCCAGAACCTCGGTCTGTGGAGACAGGATGGCCAGATGACACTGTTCCCAGGGCATTTACGGTGGGGGCTGGCGGGAAAGGCCACCTCTTGACAATGACTTCAGGCTAAGACACCCCTTGGCTTCTACCCCCTGATTCACGTGGAAGGGGGGCCAGCCTGCCCCTGTCACACCACCCTCCCAATCCAGTCTAGATCATAGACTCCTTGGCCAGGGTCTAGCCTATAGTGGGTGTAAGTGGGGCCTGGCCCATCCTCCAGAGAGGGTGTGGAGGGAGGGCTTCCTGGAGGAGGCAGCCCAGGTAATTGGTGCTCACTGGGCAAAGCAAGGCTCCCAGGCAGAGGGAGCAAAGTGTCTGAGCACAGAGACAGGAGCAGGCTGGGGAGATGGGAGGAGAGGGCACATAGGGGTACAGGGGCGGAGGCCAGGGAGGCAGGGAGGCTGGTGAGGGTTCACGTCTGTGTGCAGAAGCCACTCGGAGGCCACCAGAGAGCCAGCCCCACTCACACTGGCACACAGAGGGCTGCCACCCACCTCTGCTTCCCTGGGATTCAGAGGTGGGGGGAGAGGACAGACAGCCCATATTCTGAAAGGTGAGATCATCTCACTTTTGCCAGTTCTTGGAAAAATGATTCGTTCCCAGAAATGTCTATTAGTCACCCCCTTTGTTGAAAGACATTTTGGCACCAGCGGATGGAAAAATCAGAATGCTTTTCATGAGATGATTGGTCTCGCGCCTTCCTCCCGCCATCCCTCAAGGATGATTTCTGAGGATAACAGCTCGAAGCGGAAGTCCTGTTGGCATTTGTGGGGAGGAACTGGGTTTGTGAGGCTGTGTGTGTGTGCGTGTGTGTGCACACATGTGCAGTCTTATGGGCCCCTGGCAGAGGAGAGCCTGGGGACCTGAGTGGACCCTTCCTCCCCCAAGTATTGATACCTTGTCTCTCCTGGGGCGGCAGAAACCCCAGAGATGAGGCCTTGTCAGGCCAGTGACTGTTCCTCCTCTGCAGGCCCCGGATGGGCATCTCACAGTCTTCATTCTCACCCTGGGTGAGTCCTCAAAAACACCTAGGAAGGGAAGGCCTTATGGGATGCTGAGACTCAGCAAGATAAGGAGCGTGCCCAAGACTGGGGCCCCTGAGGCCTGAGATCTTTATGTGCCCTGCCTGCACGCCCCTCCCATGCCAGGATGCTGAGCCTTTGGCAACAGAATGGGTGCTGCCCCTACTTGAGGGTCAAGGGCTGGTTCCCCCCCATGGGACCCCTGACTCTCTCACTCCTGATAAGCCAGAAAGGAGTCTCCATGGGGGAACAGCAGGAGTGGTCACCATGGTGCTTGGGTGATTGTCACCACGGTGGGGGGGCTGTTGGAGATGATGGAGCCAAGATGATGGGCGAGAATGTCGGTGATTCTAGCAGAGGCAGGGTGGTTATGACTACTCAGTGGTGGGCTTGGCTGTGCGGCGGAGGGAGGTCATGGGCAGCTCCATGAGGGAGGAGGGAGGAGACTGAGCTGGCAGTGGAGACGATGCTGGCGGTGGAGGGACTGCAGAAGCCCATGGAGTTGGTGTAGATTAGAGGGGGTGCCTGCCGGCTCTCGTCTCGATGCTCAGGCCAGGGATGAGATGTGTGGGGTGATGGGGAGGCCTCATGAGGGACACGGGGCCTCTTGGCAAATGATGGCCTCTGCCCCTCTTCACACCCCCTGCCCTTCCTCATTTCGACCTTGGGGTCAGTGGCTGTTCCTGATCAGGGTCAATCCCTTCAAGGGCCGAACACGGGGCAGGTTATCAACCCTGTTCTGGGGGCCAGGCTCCTGTGTCTGCAGCAGACTGTGACTTCAGGGCTTGGAGCGGGGGTACAGACGTTAGAGGAGCACCCTGGGGGCTGTCCCGCTGAGGGTGGTTAGCCAGGTCCGGATGGCAGCTGGTGGTGATGGCTGGGCAGTCCTCCCCACCTGCCCCAGTACTGTCCCCAGCTCAGAGAGTCAGACGCAGCCCAGCCAGCAGCACGTGGCATGGAGTTTCAGAGGCTCACTGACCCTTCCCCGGGGGCGTGGGTCACTGGCCCCCTGGGGATCCTCCGATTTCCCCAGCCAGATGTGACCTCCCCCCTTGGAGTGCCAGCCCCATATGGAGGCCAGATGTGGAGCTGGGTCGGCATGAGTCAGCCTGAGGTCGCAGAATGCGGGTGACCACTGGGTTGGGCTGGGCGGGCAGCAGGCCCCAGTGACAGCTCGGCAGAAGCCCCTGAGCCCGCAGGGCGCTGCACTGACCGGGGCCTCCTGCCATGCGCTGTGGGGGCAGGAGTGGGCACAGCCCTGCCCGCTACAGCGACTCCCATCCCCACGGACAGGGCCCAGAGCCTAGGCGCCCACCTCTGCCGCCCCCACAGCTGTGGGTGCTGAGGCCTGGCGCTTCCTTTCCTCTGAACGTCCTGTTTTTAGGAAGGAGGTGTGGGTAGGGGAGGGCACCCAGTGAAAGATGTTTCTTCCCATTTCCCAGATGAGACCGAGGGTCGGTGGGGGTGGGGAAAGGTGATCTGTCCAAGGCGCCTGGGGACACCAGCTGGCTCCCTACAGGCAGGCAGCACCTGTCTTCTCCGGCTCCTCAGAGACCCGTCTCCAGGATCACAGAGCATGTCCCTCCCCATCCCCGGGCAGGGGTGGGATGGGCACCTCTCCCCAGGGGGATGGATCTCGTGAGTCTTGACACCCCCCTTCCCTGGGGTCAGAGCCTTAGCACGAGGACCCCAGCACCATTGCTGTTCCCGGGGTCTACCCCCACCTGCTGCTTTACCAGCTTGGCCCAGGCTGCGATGGGAGGGGGCGCACCCAGGGGGTACACACCCTTTGAGCAGCCTGGGTTACCCGTGGGGAGGCAGCCGAGGCCTTAAAAACAGAATAGTTTCTCAAAGGTTCCTAAGGGTCACCCCCAGAATGGGCTCCTCCCCTGGCAGAGCTCTGGTCAGGATCTGCTTTGGTCCCTGTTTCGGGCAACATGGCCCTTTCTCTGGGTGTCCTGGGAGAAGCAGGTTCCATCCTTTGAGGGTGGTTTGATTTTTAGGAGCTGAGTGAGTGTGGTGTTCACAGGGTGACAAGGGACCCAAGTCCCTGCTGGTCGCCCATCCTCCAGGACAGGGCTCTCTGCAGTGTCCTGGGTGTGGCCAGGTGGCAGCCTAGTGGGGTTTGCGAGCAGGACTGTGGGTGGGGGGCTCTTAGGTAGGCCCCTCTGAGAAGCAGGTAGGTATTTGCAGCCGGGATGTGAGCCCTGGCGCGTGGGGACCAACTCTCATGCCTGCCTCTTCCCCCAGAGGCTGGAGCCCCAGTGATGATGGGAGGCAGGCAGCATCCCCACTGTTGCCCTGTGTGTGGTGGGTGGGTTGGTTTGCTGCAGTCAACCTGGGGGGTAGGTGTGGGTGGTGGGGCATCTCCTGAGGCTGTCTGAGGCCCTGGGGGGCAGGGGGCGGGGCTCTGCCATCCTCCAGGATCACATTCTGACAGCTGTGGCGATGCTGTGATGGGGGGGTGGGGTACATTGGATCAGGAGTGGGCTGGGCTGTTACAGTTCCTTCTGATGGGGAGGGGGGCAGCCTTGGTGGGGGGAGGTACTTTCTCCCTTAGGCTGATTGCAGGAGAGACCAGTCTCCGTGATAAGAGTGCCCTGCTCGGGCAGGGCCAGTCCTGGGTCCACTGTCCTGCCTGAGCCTCTTGCAGAAGAGGGTGGCCAGTCTCTTGAGCTCGTCTCGCCTGAGGGCTGGGTGTGCCAGGCCATCCCCCTGGGTAACAGGGCCCCTAGCATCCCCAGAGTCTGGTCTTCTGAACCCAGATCTCCTGATGTCCCCTCCTCCAGGGAGCCCTGGGCAATCAGCTCATCCCAGGCCCCCTCACCCCTCTCGCTTCCCAAGAACAGAGCCTAAAAACACCGGGACCCGGCAGGTGAAACTGAGGCCACCTCTGTGTTGGTCTGAGAGAGGGGTGCACCGTAACTTCTGCTGAGGGAGGGAAGGATGGAACCTTCCCTAACCCCAAGTTGGGGGGTCCCCATTTTATTCCAGGTCTGAGGTGGGGCCTTGGTGGGTGTGGCAGGAGGTGGCAGCCCCCGGGGTTTTTCTGACCACAGCGCACCTCCAGCCCTCCACCTAATGGGATGCAAACTGGGGGGCTGCTGTGACACCCCATCCACACCCCTTCCGCCCACCCGCCCCTGCTGCAGGTTAGCATCCCCGAGAACAAGGCTGGCCGTGCTTGGCTGCTTCTGACCTTCACAGGGTGGGGTGGGGGGGTGGTGGTGCTGCTGCTGGGAAACATGTGGTCAGAGCTGTGCTTTATGAGAGCAGCTGCAGCTCCTGACACGCTTTCCATACCGGGAGATTTATGGGGCCGCGTGGTTTTAATGGCTTCTGCGGGGCCGGTGTCCTTCCCTGCTTTGTCCTGGCTGCCGTCTTGGAGGCAGATGGGTCTCGGGCTGGCCTGGCCCATCAGGAGGGCACGCTGGGGTGGGGAAGGCCAGGGCTGACCACCCAAGCCTCCTTGGGAGGGGCAGCTGCTGGGAAGCCCCTGGGGACCCCATCTGAGCAGCCCATAAATCGAGGAGACCTCCAGGAGGCAGGAAGCCTCGGTGCAGAGGTGTCCCAAGCTGGTGGGGAGAGGAGGAGAAAGGCCTGCCCCCCTCCCCAGAGCCACAGCCCCAGGCCCCACCAGCAGGTCGTCCACCTTGGCTGGGCCGGCAGATGAACGTGCACCAACTGTGCTTGTCGCTGACCCAGTGGCCATGCTGGGTCCTAGAACCTGGCCTGGCTGGGAGCTTTGACCCCAGCCAGGCATCCCCCAGACCTGCGAGTGGGGGGCGGCAGTCAGCCCAGTGCTGCCTCCTGCTACTGACTGTCCAAGGTGCTGGCAGTGCCCAGTCCTCAGACGGTCCGGAGCTGACCCATCCTTGGTCTCTGGGGTCAGGGCAGGAGCTGGGGACGGAGTGAGGCTTTGAAGGAACCAGGGGCTGCCTTGGGGTGCATGGTTCCCTTTGGAGGAATCTGAGCTTGAGCTCGAGGTGGGACCCCAAGCTCCACTTTTCAGCTCACCCTGGCCAGCTTCCCACTTTCCCAGCACCAGGACCCTCCACCAGGACGTGGAGGCCCCGGGGTAGGAGAGCCAGAGGTCTGCGCCTATGCAAGGACATGTCGGGGCCTCGGGCTGAGCCAGGAATGGGCATGGGCAAGGCCCCTGGCCTGCCTCCTAGCCCGAGGCCTCATGGCTCAGACCAGCCCGATGCTGACCCCTGCCTCCCTGGGCTGGTGCTTACTGCCCTGCTCTCCCTCTCAGAGCCCCAGCCCGCCCTTGAGGGCCAGGGGCAGGCCTCTACCGAGGGACGGAGAGCCATGTGCCCGGTAGCCGGATGGCAGACTCACGGGCCAGCAGGGGAGATCGGCCCTCTTAAGCCCTGCCCTGGTGGCTGGGGTCGGCTCCTGGAGCACAAGGCCCTCCCGTGAGCCCCGGAGTTGCTGAGGGGGCCCTGTTCCAGCCTGCCTGCTGCCGCACCAGCAGAGCTCTGGGGCCCTGGGGACTTGGAGGCCAGAAGACCAGGTGCAGCCCGGCCCCTGGGACCTGGAGGCCGATTCTACTTGCTCAGGGCCCCACTCTTCCCCTGCTTGCTCTATCCTGCAGGTCCCCACTTCCGTGGTGGTGGGGGGTACCTTTTGGAGCCAGCCTCACCTGCGTCTCCTCGGGGGTTCCTCCCTACACCTGCCTGCTGACTGACTGCACAGGAGCAGAACTGTGGGACCTGTGAAGCTCACCTGCACCGTAGCCCAGCCTGGGAGTGGGCAGACACCAGCAAGTGGGGCAGGCTCCTGTTCCAGCCAGTCTGCCTTAGCCACTCCCTTAGTCAGTGCTTTAGAGTCCTGCCCCCCACCCCCAGCTCAGTGCCGGGACCCTCCCTCTTTCTTTGGGGGCGTGCGGGGGGAGGGTCTCGGCAAGCCTCTTATCACCCCAGTCTGATCTCACCATCTGCCTTTCTGAGGGTCGTCTCATCTGCCTCCTTTCTGAATAAGGGGTGGGGGATCCTCCCCGAAGCTCCTTGTTCTGGCCAGTTTAGGACATCGGCACACGGATTGTGGAGCTTAGACGTCCCAGGGGCTGAGGCTAGTTAGCCTGGAGTTAGCGTTGGGTGGGTGTAAAGGACACAGCCTTGGAGACCGTGCGCCTCAGTCAGTTCACTCATACAGTTGTGTCTGACTCTTTGTGACCCCATGGAATGCAGCACGCCAGGCTTCCCTGTCCATCACCAACTCCTGGAATTTACTCAAACTCATGTCCATTGAATCAGTGATGCCATCCAACCATCTCATTTTCTATTGTCCCCTTCTCCTCCTGCCTTCAATCTTTCCCAGCATCAGGGCTTTTCCAAGTCTAGTTTTTTCTGTGCGGCTAGGGTGGGCAAGAAGCTGCCCCTGGCCACTGCAACCCCACCTCCACCCCCAATTGGGCAGTGCCGTGGGCCCCCAGGAGATGCCGGTTGTTCCTGGCCCCCAGCCAGCAGGGCATCAGAGCTGGTGGCGGCCCCGCGCTGTCTTGAGCCCCGCACGCTCCCCGAGGGGGCCGAGTTGGTCTGCCTGAGGTCACTGTTTCAATGTGTATTTTGAGTATTTTCAGCCGTGTGTGCACCACGGGGACTTGGCCTGTGCACTGCGTGTGCAGCTCATACTTGGTGGGCTGTGTAATATGCGGAGGCGTTGCCAAGGGCAGCGGAAATGTGGACTCTTTCCAGCATAATCACATGAATCTACCACCACCCGCCCCTGCCCTGCCCCCGGCCCATCCCACCCGCTGCCAGGGTGCTGCTGGGCTGGGAGGAGGATGAGGGCCAGCGCTTCGTCCCCATCGACCTGTGTCCACCACCAGGTCCCCCTCCAGGCTGCATCCTCCGTGTTTGGCAGGCTTCCTCCAGGCTGGGGAAGCAGGCTGCCCCAGAGAGAGGGTGGGTGCAGACCAGGGAAGGTGGGGCAGGGGTCTCCAGGCCTCCTGCTGGGAAGGGCCACATCCCTGCAGGTCCAGGGAATGTTGGGCCCCGGGGGCTTGGAGGGCCAGCCCAGGGCCTGACCTTGTCCAGCCGGCTCTCTGGCCTCACAGCCCTCCCCTCCCACCTGGCCCTGAGCTGAGGCCCCGGATCCTGAGTCTCTGATTCCAATGGTTATGAGTTTGCCGGCGCTGCCAGAACAAAGTACCACTGAGGGGCTCAAACAAGAATTTGCTTTCTCCCAGCCTTGCAGGTTGGAAGTACTGGATCAAGGGGTTGTCAGGAGTGGTTACCCCCAAGGCTCTCTCCTTGGCTTGGAGGCAGTCGTCATCTTGTTCTGTCTTCATGTGGTCTTCCCTCAGTGCGTCTCTGTGTCCTCATCTTATGAGGACACCAGTCAGATTGGGTTGGGGCCCACCCTTCGAACTTCCTCTTAACTACCTCTTAAAGACCTTATCTCCAAACACTGCCACGTTCTGAGTTACTGGGGGTCAGGACTTGTGTATTAATTTACCGGCAGGGAGCGATACCCAGTTCAGCTCGTAACACCAGTAGATAGGCAAAGCCACCTTCTTTGGGGTGCCTCCGGCAGCATCCTTGTTGGGCTACCTCAGCCCACCCTGGCTGCAGGGCGGGACACTGCAACTGGACCGGGAGTCTGAGGTCCCACACAGGCAGCAGCTGCACCCTGGGGGAAGCTCATTCTGCATTCAGCTCAGTCCTGAGAGGAGGAAGCTGGGGCTCCTGGGGATGCTGGGGGCGGCTCCCCTCCTTTGCTTAGCTGAGGGGCACTCAGTTGCCACGGTGACCTCTGTCTGCACAGTCAAACACACAGAGCCCAGCCACTGCTCCAGGCTGGAGGGCTCCCCACCCCCTCCTCCGAGTTCACACTGAGTGTTGAGTCCCTTGGTGACGAAAACATGGAAACGGTTGCCATGGCAGCCATTCTTTGGAGCCCTCAGACTGGAGTGCAAAGTTCAGGATGCCCAGGAACAGCTGAAATGAAAATATGGGAAAATCCGCCACTTGCTTCGCCCCAGAAGGGTGGGATTCGATGGAGGGCCTGGCCATCCGTGCCTCTTCCCATCGTCCTCGGCCAAGCGTGGGCACAGAAGGGGTGTGGGCAGGGCCCAGGGAGTAGCCCCCTGAGACCTTGAGAGAGGCTGGCCAGCATGGGTGAGTGGGCCCAGCACCCGGAGCTAAGAGGGCAGGTGAGACTGCTCGGCCTTCCCTTGGGTGCACGTCTGCGTGGCTCCTGGAGCCACTGAGCCCACCTTGTCTCGGTGTCTTCACCTGTAGAGACAAGCCCCTTTCTCAGCAGGGTTCAGGTCTGCACAGCTGCTAGGAGAAGCTTCAGCCTGACCAGGGGTGGAGGGGAGGGTGCCGGGTTCTGACCATGGGGATGGAGGAGGAGTGCAAGTTTCCTTTGGCTGGACATTAGTCCAGTGTAGACTTCTGCACTTAGCCCCTGGAATGGTATGTGTCCCGTGCACCCAGAATGTTCCTCAGCTAGGCCCTGTGGGGCTCTGGTGACTTGAGATAACCACCCAAAGGGCCCTGCAGTCAGAGTTGTTTGGGAAGCCCACAGCTGTGCAGGTGCACATAATTTGTAGATTAAAGGCTCTGAAAAGTCCCTCAGTAAGAAAACTTTTTGACTTTAACCCACTATTTCACCTAGTGGTTTGAACAAAATCCATCCCCCACCCTTTAAAAATGTTTTTCTCTTATAATATACCTTATATCCTGCAGAAATAGCATCTGTTGACATTCACTAGGGCATTGATTCTTAAAGTGTGTTCCTTGGATCAGCACCATCTGGGAGTTAGTCAGAAGTGTGCCTTCCTGGGCCCCACTCCACAGCTGGTGAATCGGAAATCGGGGCGAGGCCAGTGATGTGTGTGTGACAAGCCGTCCAGGGGATTCTGATGCCTGCCCTAGCTAGAGAGCCCCCATACTCAGGGAAACAGTAGCAGAGAACTGAAAGGGAAGGGAATGGCCTGGGGGCTTGGGGAGGGTCCAGAGGACACGGAGGCCTGGCAGGGATGGGAGGGGATAGTACAAGGACCCTGGACTTCAGAAAAGGTGCTGTGGCCGCCTTGGAGGGCTGTTCAGGGTGCATGGCCCCTGGGCACTGAGACCCCAGTCTGAGATTAGATCAAGAGCAAGGTGTTTGTCTGGGGGTGTCATGAGGCTTGATGTTAGGTGGTGGGGTCTCTGGAAATGCCCAGGAGGTACTGCCCGCTTTGGTCCACCCCAGTGGCCAGCACTGTGCTCATGGAGGGCACCTGCCCAAACAGCTGGATTCTGCCCAGAATTCATGGGGTGTGGTCAGTTCCTATAGTGTCTTCCTGGACTCTGAGGGGGATTGTCCCCAAAGACAGGGCTGGGTGGCACCTTCAACACAGGCAGGAAGTAAGACTTATCCGAGCAGTGGCCTTGGCCGACGTATCAGCAGGCAGGATTCTAGGGTCAGCTTTGCCTCCACACCCATTCCCCCAGTGGGGCTCCTGCTGCAGTCACCTCCCAACACTGGATCTCCTATTCCTTCTCCATCAAACAGGCCGCCCCATCCCGGGGCCTCTTGGCGGCAGGAGCCAGGGGGCCCAGGCGGCAGCCGAGGCCCATGCCCTGCCTGTGCTTCCTTGCAG
Seq C2 exon
CCGTCCAGATCCACATCCTGAAGGCAGACAAAGCCGGGGACTGGTGGAAGTTCACGGTGAACATCATCTCCGTGTACAAGCAGGGCACCAGCCGCATCCGCCGGGGTGACCAGAACCTGTGGATCCGCTCGCGGGACATCGCCTGCAAGTGCCCGAAAATCAAGCCCCTCAAGAAGTACCTGCTGCTCGGCAACGCGGAGGACTCACCCGACCAGAGCGGCATCGTGGCGGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATGGGCGCGGCGGCTGCGCAAGTTCCAGCAGCGCGAGAAGAAGGGCAAGTGCAAGAAGGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012137:ENSBTAT00000016103:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.5=30.8)
A:
NA
C2:
PF0175916=NTR=PD(91.6=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development