MmuINT0111253 @ mm9
Intron Retention
Gene
ENSMUSG00000020902 | Ntn1
Description
netrin 1 [Source:MGI Symbol;Acc:MGI:105088]
Coordinates
chr11:68022866-68040112:-
Coord C1 exon
chr11:68040038-68040112
Coord A exon
chr11:68026837-68040037
Coord C2 exon
chr11:68022866-68026836
Length
13201 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
ACTTGTTTGCTTCCTCACAGCTG
3' ss Score
9.86
Exon sequences
Seq C1 exon
ACTGTGACTCCTATTGCAAGGCCTCCAAAGGCAAGCTGAAGATGAACATGAAGAAATACTGCAGGAAGGACTATG
Seq A exon
GTAAGCGGGGGCAAAGGGGCTCCTCCGGGGTGGCTTGCAAGTGACTCGTGTCACCGAGTCCCTGGGACCCGTGAAATCTCTTGTCCGAGAATATCAGTCCCTTCTGTGTCCGAGATTCTCCCAACTGAACCCTGCACAGGGGCATCTGGATCAGAGGGGGCCATCGAGGCTGAGATTCCTATCTTGGGCTCTGTTAGCTCTGCCCAAAGGGCTATGAGGCTGCAGACCACTCGTTTGCCCTCTGGTCTTGTGTGTCCTTGTTCATACTCTGGCATTGTCTCAAGTCTCTTGCTTGGTGAGGTTCTCCAGCATCACAGTGGGTGGGAGATGCCGGGTGTTTATAGATGAGGAGTCTGCACTGTAAGACTGAGCATCCTTCTAACCTTGAGGATGCTCGGATCCTGAGCAGCTCCTGGGGCCTTTCAAGGGGAACACATGTCACACGAGAGGCCACACTGGATTAGCTGCTTGAGCCAGACTTGAAGTTTGCCCCTTAGTCAGGCTGGTGGCCAGGGCTTCTCAGCATATAGAAATGAATCATTAGGTTCAAACAAAATTTGAGAACCTCTGAAACCTCATTTTCTTATGAGCATTCACACACAGGTGTACCCCTCACACTGAAGCCAGGGAAGACCCCAAGCATCCGGACAGCCCCACGTGTCACAGGCCACGTGGCCTTCCCCAGAACCAAGCAACAGCAACATACAGGTTTTAGGTATCGATTCACAAGTTGCCAGGCCATGGACATCCAGGTTCAAGCCCCACCTTCTACTAGGGGTCCATGGTCAACTTCCCAAAGAAAAGGCCCCTTAAGGAATGATATCCCAGAGCAGTACAGAAGCTTCCAGCTCCCACAGAGGAACAAACCCGGGTTTCCACAACAAGTTTACTGTCCTTGAGAAATAAAGGAAGGACTTGCCTCCTTCAAGCTGGGGTAGTGGGTACAAGGAGGACATGACCTCTAAGGTTTCACCCCCACTTCTGCCAGAGACTAATGAGGGCAGGCACAAAAAACAAACAAACAAACAAACAAACACAAACAACCCCCCAAAAACAAACAAAAACAAACAAACAAACAAAAACCCAACTCTCCAAGCCTCTGTTGATTGAGAAAGCGGGGTTCCTGTACTTTCCCAGGCTTTGGCCTTGAAGCCTGATCGATGCTCCTGGCAAAGCAAAAGGCAGGGTGCAGTGAGGACTGTGACCACTATCACCCCTCCTACCCCATCCTCAGCACGGGCAGGAATGGGAGTGGGCAGGCCTGCTTGAGGAGGGGTGGGTGGGGGTGGGCTGGGACTGAGTTATCTCTGAAAAGTACTGGTCCACAGGATCAGTCTGTTCCTTGGATGCAAGGGGAGAAATTGTGACATCACCAAAATGGATCCCATGGTCCTTCCACCTGATTCTTTTGGACTCAGCCTGGTTTTGTTCTCGCCCATCTATTATTCCAGGGTTACCCTGCCCCGTGGTAGTGCCCACATCTACACCAGGTTGACCTTTCCTTTATTGAGCCTGGAGCTTTATTGACCCTGAATTCAGTGGGTATTCCTATAATCAGCAGGAGGGGGCATCCTTCTTGTGTGGTGAAGGGTTGGTTATGGTCTCTGGGCACCATGCTGGCCTCTCTTTTCTGGCGTATCTTCTCAGGTCTGACAAGACCTGGATGTATAGACGCCCCACCCCCGCCCCAACTGTCACTGCCTGGCTCTGTTTTTTGTTGTTGTTGGGTTTTTTTTTTTCTCCTTCTCCAGCAGCCCTGGGAGGTTCCGAATCAGTCCATTTTCTGTTTTCCTAGCAAAATATCTGGGCTTTATTTCTGACTCACAGTTTCTGAAGTCCAGGAGTGTTTATATCCACTCAGCTTCTAGTGAGGACCTTGTGCTGTGTCAACCCACAGTACAATGTGACACAGAGAGGAAGAGGAGACACAGGGAGCCAGGTACCTTGCAATAGCATGCTCTTAAGATCGTTACTACCTTTCATGAGGACACTCATGAGTGTGACCTCCTCCCGACCCAGCACACCTCCAGAGGGCCCCACCACCACTCAGTCCCATTCTGCTGGGGACCTCCATACAGGCTCTGATAGAGACATACCATGTTCTAAGCACTGCAGGGATTTCTGGTTTCAGTAAGGTCATTTGAAGTTATGGGAATCTCCTCAATGCAGTTCAGTCTACCATGCTGCAAGGGGGCTCATGTGAGTTCCACAGAGGGCTCAGAAGAGCCAGGCACCGTGGGATATGTCAGGCCTTGGAGCCTGGTTTGAGAAGGTGGAAAGGCAGCTACAGGTCCGTGAGTACTGCAGGGGTCAGCCAGCAATATAAGCTTTGCTCTGAGGCTGAGGAGAGGCTTCTCCTTGGGCTTTGCTGGGGTGTGGAGACTCTTCTATGTATCCTTGGTTGGACAGACACAGCCTAGGTGAAGTGTGGCTAGGTGGCTCTCCCATACTCAGAAGACCGGGCCAGCCCAGGGGACGATGGAGGACAGGAGAGAATCTGCCTAGATTCAGAGGAGGTAAGGCCAGGCCAAGTCAAAGAAGGGAGCTAGCTCAGAGGCTGCCTAATCCCTGCTTGTTTGCTGACTGACACTCAGGCAGGGGGCCAATTAGGAAACACATTTCCTTCACACCCAGGACACTTGGATATTCCTGAAGCTGCTAATTAGAACCTAGGTTTTGCCACCCCTGCTGAGAGAAGAGCCCCTTTCTCCTCCAGCCCCACCAAGATAAGCTTGACCTGAGGCAGCTAGTGAACTCTCTTTCAGGCTCCACTGACCCTGAGTGGTAGCCAGTAGGCAGAAACCTACAGGGCCAGGAGGCCTATGGGAAGACTGGCTGGCCAGCCCAAGGTGTGCCAGCCCTGAGCCCAGACCAAGCTTGGATGGGTGGATTTAAGACAAGGCAAGAAAGAACAGAGGTCAAGGAGAACCTCAGGCCAGGACCTTGCCTGGCTGCTGGCCCCCATCTAGAGAGGACCCCCCCACCCCCACCTCTAACCCGGTGGGGAAGACGGTTCAATCTTTCCCATGTGGAAGCTTCACCAGTCTGGGTGTCCATCCTCACGTTTCAGATGGAGGAGATATAATATCCAAGGGCTAGGCACCATGTCGAACGAGGCTGCTAGTAACCCACGGAGGTCAGGTCATCGGCACCTGTCCGCCCCTCTGCTGAGCCACCTCAGTTCTCTGTTGCCCTCTAGGGGATCCCGCTTACCTTACAAATGCTCCAGAAGTCACTGCCACGCCTAGCGTGGAACCCCTGCTATGAAGACAGGTTTTAGTCTTTGCAAGAGTTCTCAGAGCACCTCTCCTCACTCTGAAGGAACCCTTCTTTTGTGGGACGGTGTGTGTGTCCCCTTCACACCATGACTGCTCCCGTCATCACAGACATAGGTCTCTGGACTTCTGCCCCCGCCGTCAAGTGCTCTGGCCCAGCACCATCACAGGGGATGTCGTTGACTGTGGTCATCTATGTCCTGGGTGTTGTTGCTTCTTGGGGGAAAGGCTCCTCTGTCTCTCACTCACATCTTTAACTTTGTACAGTGTCATCCTCACTGCATTGAGCTGCAGCTCATAGACACCATCCCTGTACAACACACACACACACACACACACACACACACACACGTACGTCCGTACGTCCTGCCACAGGGATCTAGGAAGTCCTGGTACTTTATCCCTTCTCACCTTGGAGATTTTCCCTTATACACATTCACTAAAGCCCTAGGCCGTGCTGGGTGCTACACTCACAGATCTGGCACAGGGGATTGGCCCTCAGGGAGTACACATTTGGAAGAGAAATACACAACGAGAGCCCAGAAGAAGCCTGAGTGGGGTTGCTCAGGATCTGATAGACTGTGCCCCCAAAGCAGGGATCCCTAGTAGTGGGGAAAGTCTCCATGGCTGGTGAGGTCTGAGAACAAGGAGGGCAGGGGTGCTGGGTGAGGGGGTGGGTAGGGTCGGAAACAGCCTCCTGGGCCGCTCACATTTACATGCAGAAAATATCATGAGCCTACTACTGAGGGTGGTGCCTGTGCCCCTAGCAGCTGCCCAGGGAGCCAAGTGTCCTCTTCCTTCTCCCTGGGATGCACATCAGCCCTTGTTGTGAAAGGTGAGATCATCTCTCACCAATTCTTGGAAAAGTGTTTCATTCCCAGAAATGTTTATTAGTCACCCCCCGTAGAAAGACATCTTGGCACTACTGGACGGAAAACGGAAGATGCTTTCACATGAGCCTCAAGTCTTCCGCCTGACGGCCCCTGCCAGTGGTTTTGAAGGGTTCAGCTTGAGGGGAAGTGCTGTGGACATCTTGGTCCTGTGTGGCATATGTGCTAGTGTGCTGTGGCCCAGGTGGCCCTGATGGAGAGCTCTGATATAGCTCAGTGTGCCTTTGTGTCTAGGAACCTGTGGAGTCAGTGGAAATGCTGGGTGCGGATAGCTGAGCCAGGGCTGGACTCCCCCACGGCCCTTGTGAAGACCTAGTCTCTCTGCTTCAGCCTCAGCTGTGTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATGAGTTCTTATTCCTGTGGCTCACCAAGACATGACAAGGTGAAACAGCAAGCTGGGTATCAGTGCTGTGGGGTCCTAGGCCTAAGCCTTCTCCTTCCCCATGTCAGTGATTTAGCATTTGGCAGCCTGGAGTAGACATAGCAGCCCTTAGAGGGCTCACACATCCACACCCTAGTTCAGAACACTGGCTCTCAGCTCCAGATCAGACATGGAAGAATAGCCACACTAACATCTTGATGGGTAAAGGAAGGAGACATGGTTTCCCCCATTGTAGAGTCCCTGAACTTGCAGGCAGATGGGATGGCATAGTGACAACTATGGCAACAACGGTGGCAGAGATGGAGGAGGGCTTGTGGTGGTGAGTGGGGAAAGAGGCAGATGTGGAAGGGGATGGATTACGGTGCAGGAACCGAGCAGACAGTTGGCCGTGGTAGCACTGCTGTCATGGTAGAAGTTCTGCTTTGAGCGGCACACAGGGCCCAGGCCTAGCTCTGGTCTCAGACTGGGAATAAAGGAGTGCAGTCTCAGAGCTGTGGGCCTGGAGTTTTGCCACTTGAGAGCATTCCCTCCCCTCTTCCTCCTCAGTGGCCCTGGGATCAATGGTGACTGTCAACAGCCTCAGTCTCTTCAGAATGCCAGATATCTTAGCAGCCATGTCATAGAAATATGCTTTCTATATCTTCTCCAGTGACTCTGGGTATGGACACAGGTACTAGAGTGATGTAGGGCTTCTGCCTTTTCAAGGCAAGGTCCTGATGTGAGCTGGAGGCTGCTGGCAGTAATTTCTGGGAAGAGCCACTGTCACCTGGACATCCTCTGGTTGAGAGAACGGGGCACAGACAAGACAGCAGTGTGCAGCACAGTGCATCAGAGCTTGCTGGCCCTCCCTAGGGTCACTGGCCCCCTGAGGATCCTCCTGTTTCTCCAGCCAGATGTGACCCCCCCCCTTCCTGGAGTGCCAGCCACATGTGGATGCCAGATGTGGAGCTGGATCTACATGAGTCAGCCTGAGGTCGCGGAATGTGGGTGACCACCAGGTTGGGCGGGAAAGGCCAGGAAACCCTAGTGACAGCTGGATAGCAAAGATTCTGTGCCCACATAAAGTGGCCCTCCCTAGGGAGCCAGGTGGGGGCTGGTGCAAGCATCCCTCCCCAGCCTTGAGCCTGGCCCCCTGCCACTATTGCTCCAGCCAGTCCAGAAAGGGGAGATGGCTGTCCTGGATCTGGGCAGCCAGGTTCTCATCTGCCTGTGTGCTCGTTTGCCATATTCTTTTTTGCCCCTTCTAGTTTCCTGCATGGTTTTTGTTTTTTTGTTTTGTTTTGTTTTTGTTTTTTGTTTGTTTGTTTGTTTTTTCCTTTTTGGAAGCAGAGATGGCTCAAGGTAGCTCAGAGAAACCACAGAGATTTATCCAGTAAAGGATGTCTTTCTCCATTTTACAGAAGCTCAGAGTGGATGGTCTAGCCAGTGTCTAGTGAGCCAGGGCAGAGTTGTGGTAGACATCACCAGGGACTCTAGTCTCCATTGCAAAGGACACTAGCACACCAGTCTTTGATCCTGGGCTTCCTATCCAGCAGTCTCCATAGACACCCCAGTTTCTCCCTACCTGCAGTCTTGGAGGATGCACCAAGCAGCAGGGGTTTTGAGAGACATGGCCTGAGGTAACCATACCTCGAAAGCTATCACACTTACACTACTTAATCCAAGGAGACCAGCTGCCAGTCATGGCAGTGCCAACCCTCTGCAGGAGTCAGTTTATTGCACTGCTGGCTCTGTGCTGTGTGGCTCCTGCAATGGGGCTCAGGTGTTTTATTTCTGTCTCCTGGGGGAAGGAAGTTTGGAGGCTGGTTGGACTGTAAGGAACTTGTGGGTTTTCAGAGCCTGTTGTGGATGGAGCATGTTGGTTCTGGTCCAGTATGGGACAGAACTCCAGATGTAGGTATCTTAGGGAAGCTTGGTAGTGCTATTCCAGCCAGGGCATCTGGGAGGGAAGAGCTATTCTTTGCTCCCTTGCTAGCTTCCTGGAGCTGGAGCCTCAAGGGGGAAATGGAGGTCAGCAGTATTTGCTTGAGGGACTTCTGTGTGCTCTGCTGTCTTCTGTAAATGGTATAAATGTGTTGTCCTGAGTTGGCCCATATCCCCTCAGCACTAGGCTTTCTTTGAATCCTGGAGGGGGTTGGGGGGTGATGGGACCTGGTCCTACATCACAAAGAGGAGGCTGTTGGTCACCTTTTCTCCTTCAGAGGCCAGAACTCCATCCCTGCCAAGACCTCCGGCCTGGGGCTCACTCATCATCCACTTTCCCATAGGAAGGTTCTGAATCAATACCCAGCAGGCTTTGCTCTTTCCAATGCCTATTTTGGATGTAGATGTGTAGGTTGGAGGTGGGAGGGTCTAGCCAGTATGGGAGGCAGGAATGGATGGTTGGAGCATCTCATGAGACCATGCAAGGTGTTCTGAGGTGGGATGTCCTTTTAGCAGCCCAGTTTATCCCGAGAGGTAAGCCGGTAGGGTCACTGTACAACATAGGCCAGTCCTCCAGATGAGGCCACCACAGACTTACACTTGTGAATCTGAGTGAAGTGGGTATCGTGGCTGGCATAGGAAGTGCCTCCCAAAGGTTGGGAACTTAGTAGGCGAGACCTGGTTGAAGTGTGGGAAGTGAAGTGGGTTGTGGGACTGGGCCCATACATCTTGTCCCCAGTCCCCTGCTTGCTTTCTGCTTCCTGGCTGTTGGGAGCTAAGCAGCTCTGTTCAGCTTATTCTTGCCACCATGTTTGGCTTGACCACTGGGCCTTAAGCAGTGGCGCCCACTGGGAACATGTCCCACAACCGCTGAGTCTGTGGCCCAGATAAAGTATCTCCTCTGTCGATTACTCAGATATCCTATCACGGTAACGCAGAAGTCGTTGACCCACTGGGCTGAGCCAGGTAGGCTGCCTGTTGCTCAGGGCCAGGACTAACACCTTCTTCCAAGATGGTTCTCTGATGTCCCTTAGCTCCAGGAGATAGCCTTTTCCCTCCCAAGGTTGGAGCAGCGGGAGGCAGCAGCCAGGATCTCAAGGCGGTGTGGCTGGCTTCTGGGTCTGTCACAGCGAGTCCCTACTTTACTGACGAGCAGTAGGCAGGGCCGCTGTCTATAGGTCTAAGCATGTGTGCCCACCACAGGTCTGCGCTCTCCACAGGCGCCACACTTTCCGTAGAGAAGCCCTGGGAGCAGGACCTGACCTGGGCTGGCCCGGAAGTGGGTAGTCAGGCTGCATTTCATGAAAGCCGCTGAGGCTCAGGACACACTCTTTCCACTTGGAGATTTACGGGGCTTTTGATTTTAATGGTTTCTGTGGGATTGGTGTCCTCCCCCATCGTTTCTGGCTGTTGTCTCTAAGGCAAATGGGCGACAACCCTTCCTTAGCAGGACAGGCCTAACAGGAACGTATAGCTGGGTAGGGAGGGGAAGGGAAGCGAGGGGCAGCCCTTTGGAGGGGCGGTTGTGGGTGGCCCCTAGGGCCCACTTTGAGCAACCTATAAATTCTGGGGAGCTCTAGAAAGGCAAAAAGCTTCCCCCACAGAAGTGCTGGAGACAGGGGAGTGGCTAAGGGGCACAGTTGTGGCCTGCCTAGTCTCTGCTCTCCCTTGGCTAACCCAGCAGGTGGCCTCTGCCCTGATGGACCTTCCTCTCAGCTGTGGGCTCTCAGCAAGACAGTTAGCCAGCACCACCTGCCTTGTCCTCCTAGGTCAGGCAGAGTTCCTAGAACCCAGCCTCAGTGGGGACCTTAGATCTCAGAGGCAGGTCCTTTAAACCTTCATGCAGGGCTATCTACTCCTGTTCCCGTCTGCCAACACCCTGTCCTTAGAAGGCCTAGAGCTCCCTGTAGATCCTAATGGCCGCTAGTCCAGAGCTGGAGTGGGGCTGTAGGGAGGCGGGTTTTGAGTGAACTGGCTCTAGGTAGAAAGCAGCAATTTTCCCTAGGCTCCAAGCACAGGATAATGGCCAGGGGTTCCCCATGCTGCAGGTTGCCTCTAATGGCCTGGGAATTTCCCTGGCACTGGACTTAAGGGAGAGGTTGCGACCACTGGGAAGGGTGGTCATTCCCTCTCTTCCACGGTAGGACAAACCTGGAGCTGTGGTTAGGGATATGTGTAAACAGCAGATTGAATTCTGCACCCTGAGACAGAGAGAGAGACATAGCTCCAAGACATCCCGGCTGCCCTTGAGCTGCCTCAGGCACTCTTCCACCCTCAGCCTTCCACTTAGTCCCTACACCAGGAGCAGCATAGGTGGCCCTCGACAAATCAGACTCCTGTGGGCCTGGCCTTCCGAGTCCTCTCCCCACCTCCCCGCCCTGAACCCCACCAGAGTCACAGCTGGGCTCTGTCACCGGACTGAGTGGGCAGGGCACCCAAGCTTGCTGGAGATGCAGGTTAGAATTCAGGTAGGGGACGGTGGGCTTTGTGGCTTACCCCGCCCTGGTGGCTGAGAAACATGCTTAGCATGGTGAACTGGGAAATTGCTGAGAGGAGCTGACCAGGTCCTACCCAGGTACAAGGTGCTGAGTTCTGGGCTCCTCTCCTCCCACCCACCCCCATTAGATTTTTCTCTAAGGTTGTGCTCCATCCCATAGCTGGTTCCTCCCCAAGGAGCCCAGCTGGGGTTGCAGACAGCCTGGAAGGGTTCTTCCCAGCTCTGACTTTGTCTGCACCAAGCCCTTGGAAGGCACAGAGGCTGGGAATGCACACACTGGCTCACTTCAGCTGTTGCCACTGAGCAGGAGACGAGGGAGGGAGGGTAGGCCTGTGGTGTGGAGTCCCTTCTATATAGAAGGGCCTGAAGCATCAGCCAAAAGTGTCTGTCGCATGGGCCCTCCCGCTTCTGCTCCAACACTGGCCCACTCTCGGAGCTGAGGGCTTCCATTCCAGCAGCTACCTGAAATTGAAGGACTCCCTTCAATGCTCCTGGTGCCCATGATCATCTTGGTGTGAATCATCTCATCACCCTCCTTTCTGAATGGAGGAGACCTCACCTGAACTCCACACTAGAGGATAACATCAGGACATTAGCCTAAAGATGGGGGGTTAGCACCCTGGTGGGTGGGTGGGGTAAGGTTTATTGTGCAGCCATTTGTACTGTTCTAGCAAAGTGCATCTGACTGTGTAGAAATCTATAGACTGCAGTCTGGGTGGCTAAGAGGTCTAAGACCAAGCTACCACCCTTCTCTGCTTCCAAAATGCCACCTTGTTGTTGTGGCACCACATGATGGGAGGGACAAGGGCTCAGTTAAGCCTCTAAGAGGGCCACTGCTCTGCACATGAGGGTGGAGCCCACATACTGCTGAGTTCACTTTTTAAGGGCTCCTAACTCCTAAATACTGCCCTCTGGGCGGGACACCAATTTGAGGCCCAGGGCAGGGTGTGAGAGTTCTGTGTGGCCCCAAGCTGGCAGAGCTGTTGCTCAGTCACCTGGCCAAGTGGGATCACATATCAGCAAGTGGTATCTAGGTGTGGTCTGGAGACCTTGGTCATTCCTGATCAGAAGCAGCAACCAGCAGCCGGTCAGAGGTGACAGCAGTCCTGGTGTGTGCCACGCGGCTGCCAGAGCGTGCTCTCCCTAAGCGCACAGAGCAGGTCTGTTTGAGGTCACGGCTGCGATGTGTATTTTGAATCTTTTCAGCGGTATGTGCACTGCAGGGACTTGGCCCATGCACTGTGTGTGCAGCTCATACTTGGTGGGCTTTGTAATGTGCGGAGGCGTTGCCAAGGGCAGCGGAAATGTGGATTTTTTTTTTCAGCATAATCACATGAATCCTGCTGCCACCCTCCCCTGCCCCTGGGCCTGGACTGTCTCAGCCTGCAGTTAGGAAGGTCCCTACAGACAGAAGGAACTAACTTCTTAATTCTTGAACATAGCCGTGTCCAGTGGGGACCTGCAGGGCTCTGGTGAAGCAGGTCCTCTTGAGGCCTCTGGTAGTCTCTAGGGAGTGGAGCCTGCCTTTCCAGGATAATTCACGGACAGGCCTGGGGTGAGCCGGTGATGCTTATCTTCAGAGCTGTTGCAGGAGCACGAGAAGGAAAGTCTCCTGGGGAACCTGGGGGTCCAGCCCAAGCCCACCTTGTCTAGCCAGCTCTTCTCCTGAGTCCTTTTCTGTAAAGCTGAGACCCTCTCAAGCCTGTCCATCAGGCTGATGCCCAAGACCTCTCTAGTTATCCTGGCATGAGGCCCACCCTCATGACCTCATCATAATTGCCTCTGGAAAGGCCCCGTCTCTAGATTGTTCTTCTCTGAGGTGCAGGGATGTAAGGGCTCCAGCAAAGGAGCTTGGGGCATCAATGCTCTGAGTCTGGGATTAGACTACATCATCAAGGGCCCTGCCAGAGGGCCCTCCACACATCCAGCCCATTCTTGGTCAGGCAACACTGGCTGGCCAAGGGCTGCCACACAGGGAAACTGCTGTGTCCTGAGAGGCTCATTCTGCATTCAGCTCATTCCCAGGAAAGGAAACCAGGGCTCTGGCGGGAGTTCTCCCGACCACTTAGCTGAGGAGGCACTCAGTTGCCACGGTGACCTCTGTCAGCACAGTCACTTCTCTAGGCTGGAGGGTTTCCCCACCCCCCACCCTCAGAGTTCACACTGAGTGTTGAATCCCTTGGTGACAAAAACATGGAAACGGTTGCCATGGCAGCCATTCTTTGGAGCCCTCAGACTGAAGTGCAAAGTTCAGGATGCCCAGAACAGCTGAAATGAAAATATGGGAAAATCTGCCACTTCCCTCGCCCAGGAGGGCAGGTTGGAGCGTCCGGTGCTCCTCTGCACCAGCTGTCTGCTTCCCAACCTTGGCCAGCCAATGTGGGCACAGGAAGGGAGCAGGGTGCTCTCCCCTATACACCAGAGACCTTAATGGGGAGTCACCTGGAGCAGCAGGGACCCAGGCAGGCTTTCTGACTGTGGAAGAATCAGGGAAGTGATGAGCTGGGCTTCCCTGGGGTTTCTAAGTCAGGGGGCTCAGGACAGTCAGTTGGTCAGGTGGTCCTCAGCATAGTCCAGGGGTAGTGCTTCCCTGCCCTGAGGGAGGAGGCATACACTGTGTGACATATGGGGTCAGCGCAGGGAAGGAGCACTGGCGATGGGGATAGGAACAATGTCTGCCTCCCTTGAATGAGACTGAGCACAGCTGAGGCCTTCTCTAGGAATCTCCTGGACTGTAGAGGGTGATTGGCTGTGTGTTCCTCTCTCGCCAGCAATTCCCAAGTAGGCTCCGAGAGGCTCTGGTGGCCTAAGATGGGCCAACCACGGGCTTCTACAGCCAGCAGTTTTCGGGAAGCCAATGCAAACACACTACTTACCACACACAGCCTCTCAAAAGCCCAGCACCAAGGGAATTCTTGAAGGGAACCTGGTGTTCCCTCCATCTTTTGCTGTTGTTGTGTGTGTACACACATGGAGTGTTTGTGTGTGTGTATGTAGGTCAGAAGTTGAGTTTGGGTATCTTCCTGTTGTCCTCCACCTTGTTGGGAGAAAGAAGACTGTCTGTCATTGAACTGAGAACATGCCAAGCACCAAGGATCTGCCGTCTTCATGGCCCAGTGCTGGGATTGTAGTTACGAGTCCTGCTTTGCTCATGAGTTCTAAACTCATGGTCTGGCAAATGCTTCCTTGACTGAGCCACCTCCTAGCCTCTCCCTCATAAGCATGCCCTTCTACTTTAAAGTGCCTTCAGTAGGGACATCTTTTCACATATCTGCCGCTCCTCTCCAGTGTCTTCCCCCAGTAGCAGCAGCACTCCTGGGGAGAGCATGTGAACTGGGGACTTTACCCAGTTCTGGTGAGTCAGAAGCTCAAGGGTGGGTGGAGTCAGCACCGCACCATTTGCAGAAGCTCTCCAGGGACCTCTGGCGCAGTCTGGTTTGAGAACCCCTGTAGAAGAAGACTGGGGGTGGGGGGAGGGAGTGGGACAGTGCTGAACCTGAGAGGCTCCAAGGGAGCTAGCAGCCTGGCAGGGAGTATTTTTGAGGACCCTGGCTGACCCTGGAAAAGCACTCTGGCCATGTGAGTGGCAGACTCTCTTGATGCTGCGTACTAAAATTCCCTGATGGGCTGTTTCAATTTCATTGAAGTCAGGATGATTTTGGGGGACAGGTGCCATCCTAAGGCTTGGGGTGAAGTGGCTGGAGCCTTTGGAAGTCTAGGCATGTGAGGTGCTCCTCATTTCCAGAGGAGTCAGCCCTGCTGTCATCAAAGCCACCTGCCCTCAGGGGCAAGCAGACTATCTAGAGAGCTAGGGGCATGCTTAATCCATCTACCCCGCTTCCCTGGAGTCTCCCTTATGGATCTCAACATGTTCCAAGAGGCAGTGTTGGGCGGGGGGCACCTTCAACAAAGGCAGGAGCAACACTTCTTGGGATAGGGGCTTTGGCCCAGGTATTAGCTCAGGTTCTGGGATGAGCTTAGCTCACCCATTGCCCGTGGGGAGCCCTTTGCAGTCACTTTCCAGATCCCACTCCAGGTTCTTGTAGGACATCGTGCAGGTCGGGCCCATCCCATCCCAGGACCTGGGCACCTGGCTGCACTTCCCAGCCATGGCCCACACCACTTGTTTGCTTCCTCACAG
Seq C2 exon
CTGTCCAGATCCACATCCTGAAGGCCGACAAAGCAGGGGACTGGTGGAAGTTCACCGTGAACATCATCTCCGTGTACAAGCAGGGCACAAGTCGTATTCGCCGTGGTGACCAGAGTTTGTGGATCCGCTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACTTGCTGTTGGGTAATGCCGAGGACTCACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATGGGCACGGCGGCTGCGCAAGTTCCAGCAACGGGAGAAGAAGGGCAAGTGCAAGAAGGCCTAGCGCGGAGGTGGCGCGGGCTCCAGGAGGGCGGGCAGGGCGCTGGCAAAGGCTGGCAGCCTTGGACTTGGCCGTCAGGGGTTTTTTTGGGAGGGTGGGGGCGGGGCGAAGTCGAAGTGGGGCGGGGCCCTCAGCGGCTCCGCCCCAGCCCCACCCTCACACCCCTGGCTGCGCTCTTATGCGCATGGCAGAAAGCACCCTGTATTGACAGGCCAGGCCCTGGAGAAATGAGGACAAGACATAGCTACCTCACGGCGCTCCTTCCAGAACAGAGATGCGCTTCCCTAGGGCTAGGTGGGGGTCGCCGTGGAGGGGTTAGGGAGGTCCTGAGAGGCGGGAACAGAATGGCACAGTGGTCTACAGTCGCTGTGTTTGATGGTTATTGAAGGGGGATGTAAGAACTGTGAATTTTTGGGCCTGCAGCCTGGGCAGGGGCAACCAATCCACCACCAGACACTAGTCACGCCCCCCTCCTTTCTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGGTCCCTATGTTAGAGGGCCCGATGACACTGGGATCAGCCAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGCTCTACTCCAGTGGGGCTGGCCCAGGCTCCTGGCCCATCAGAGGGCCTAGGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGCCTGTGGAAGGAGGCATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGCCCTTTTTATGACATTTTCCAGGGGAGGGGGAGGGGTACTGGCGGGGGTTTAGGGCAGTGACACTATTTGTGTAATGACATCAGCTCCCACAAGGCCTCACAGCAATGTCAACAGCTGGAGAGGGCCTGGTTAAGTCTGGAATGCCAGCGGCTGTCTAGGCAGTTTGAACCAGGCTTGGGGGAAGGGGCTTGCCTGAGTCAGGGTAGGGTCGCTGCTCAGCAAGGTGCCTGGCGTCCAAGCTGGAGGGCAAGGCCAGGAATGGTCAGGTTCTTGGGGTCCAAGCATTCTGTGACTGCTTCCTGCTGCCGCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACCCACTCTAGCTCCCAGCTGTCTTGGTCTAGCCTGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGCCCTCCTGTATGCCTAGCTCTCTTTTCTCTTAGAGACTTAATGTCCTCACGCAGGCAGCTCCAAGCTTCCCTTCTGGTTGCTTCCCAGGCCCCTTTAGCCTTTCCCTGCCTCCCTGTACTCGGGCCTCTAGCCTCGCGCCCCGCACACTGGATGAGAGGCCTGGCCCTCTCAGTCAGGAAATTGGTTTCATTTCTCCTGCCCACTTGGCTGCCCTGAAGGGCCATATGAGGGATGAAGCTCAGCCCCTCAGTGACACGGCTCCCTCTGCTTCTCCACTTCTGCCCACATCACCACTGCCACTTACTGAGCACCCTCTTGGTGCCAGGCACTTTACCCATATGCTCCTGGCCTGTTTTCACCACAAACCTGCGAGGCAGGGATTCACTCTTGTCTTCGTGTTCACCAGTAAAAAGACATGTCCACGTGCCCAAGGTCACACCAGCACCGGTACTCAGACTCTGACCTCACCACAGTTGCACATCAGCAGTTAGCCCTCTTGACACTCCCACAGTAGGCGAGGGTTGGGTGGGATAGTGGTTACCACTGAGACCCAGGCAGCTTGTCTCTAGAGAACTCTGAGGATATGAGCCTGGAGTATGGTCTGGGACAGACCCAGCAACACCTCCTGAGGAGGCATCGGGAGTGGCGGGGAATGAGGAATGGACTCCCTAGTGGAAAGCCGCAAGATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTGCTTCCCTAGCCGGAGGAAGACTAAGGCTTCAGAGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAAGGTCCACTATCCAGGAGAGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCCACGCCCCTGCTAAGCAACAGAGACGTCTTGTTAGAAATCTACCAAGGCCTCCTGCCCTGCCCTCTGTGGCCTGCTCAATGGGGGCTACATTAAATAGCCAAAATGAGCCAAGTTGTGGATAAGGTCATTGCTGAGGGAGCAGGGTTTGTCACAGCCACCACCTCTGTGGACCAGAATCCAGCCCACCTCTCCTCTGCCTGAGAGCCAGCCTTAGGGAGGCAGCTGTCTCCTACCCACCCTAGGGAGGAGATGGAAAGGGGGAAGAAGACATCCTCTTTGTACAGTTAGGAAGGGGTGCAAAATGGAAGTAGGTTTTTGAGTTTGAGAGTGTATTAACAGAGTTGTGATATGTAGGTCTTTGAAGAAAACCATACCAGGTTAGTCACTTACCAGTCAAGATTTCCCAGCTGTCCCTTTGCTTACCATTTGGGTAGTCTGGTCCCCTGTCACCAGAATGCCTCCTTTGCTGACACACAGTGGCACAAAGGTATGTGGTGAAGGTGATGACATGCTCCTAGGTACAGCTGTGAGCTGTGGTTTCTGGCCAGAGCTTCTGTCCCAGAAAGCAGGGCAGGAGGCAGGACCATCCGGCTCCTTCAGATGGGAGGGAGGGTCAGATGCCAAGGGCAAAGCCTAGGGAGGCTGGGGTGGCCTCTCCGAGGGCCTTAGGGACTTTCTAGAACTCTGCCTCAGTGGTTACATACAGGCAGTGGGTACAGGCTGTCTTAGAATTGCCCCTGAGCTGGAACAAGACTGAAATGAGGAGACCCTTCAGGACTGACCTGGGGAATGGTTCCTTTAGGGTCTCAACACTTGAAGGACTCCATCCAGGAAACCTAGAGAGTGGGCAAGATAGGCTCACTAATGGGCCGTGGTTCACAGACAGATATTCCTGTGGACCAGAGCCATGCCATACCCCAGGGGTATCAAAATTGTCTTTGTGGGGCCTTGCCCCTGCCAAAAACTAAGCCAGCCTCACCTCTTGTGTCAGCGGACTTCCTTCCCCTTTCCCTGATCTGGGTACACCCCCCCGGCCTCCCTCCTGTGTCACCGATTCTGCTCACACAGAATTGTAAATGTTTAGTTGTGACCATGACATATTGTTTGGGCCAGTGTTCCTTTCCAATGCATACTAATATATTATGGTTATTATATATGAATATATTTAATGACATGGAGAAAGTTGTGGATTTTCTTTCTTTTTCTTTCTTTTTTTTTTTAAAGTTTTTTTGTTGTTAGAGTTGTAATGGACCCAGACGGAACTTGTAACGTGGGCCCTACATGATAGAACTAAATCCAGATATCATTAAATAAACTCTTGTATACTGTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020902-Ntn1:NM_008744:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(7.5=30.8)
A:
NA
C2:
PF0175916=NTR=PD(91.6=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: