GgaINT0013029 @ galGal3
Intron Retention
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14028103-14029190:-
Coord C1 exon
chr14:14029033-14029190
Coord A exon
chr14:14028282-14029032
Coord C2 exon
chr14:14028103-14028281
Length
751 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
AAGGTTTTTTCCTACCGCAGAAC
3' ss Score
7.33
Exon sequences
Seq C1 exon
ATGCTGCATCAGTTCAGGGCCGCCAGCTTCTGGCAGGGCTGGAGAAAGTGCACAGTGACCTGGACAAGTTGGAGAAAGCAATAACAGCAAACCTCCGTCCGCCACTGGAGCAGAGCCGGGCTGTGCAGGACAGCACCGAGCGCTCCAAGGACCTGAAG
Seq A exon
GTATGGGGCCATAGGAGTAGGCACATTGTGCCACAGAGGGACCCTGCTCCCAAGGCTGGGGTCCTCCCAGGGGGTCTTCAGTGTGGTTCTTGATGTGCTGGGTGCTCCCAGGAGCGTGAGGGCATGGAGCAGTGCCACCACCATGTTGCGACCAAACAAAAATACCAACACTTGCAGTCCAAGGCACAACTTCTCCTTGTGCACAACTCAGCATCTGCTCCACTAGGCTCCAGTGCTGCCTTCCTCTCCTCCGCCCCCTTCCTCTCCTTCTGACCCCTAATTAATTCAGGCTCTGTGCCACAAACCTCCCTCATTCCAGGAGGCAATCCACCTCCTGGCTACATTACCCGCCGAGGGCTGTGTCAAAATCTGAGTGCCACCACAAGTGAGAGCAAATTGCTCCAGCTGTCTGCAGCACTTTGATGTCCAGGCGAGAAGTGAGCCTTCAGGCTGCAGAGCCCAGTGGTCCAGATGAGCTCAGCACGTTTCCAACAGAGCTGGAGCTGCTGTGAACCAGTCCCTCCCCAGCCAGAGCTTCTTGCTGAGGGCTACCTAGCCTGCTCCAACAGAGCTGGATACGAGCCTGGATGGAGAAAACATCCTCTTGTTCCCTCTAGGGCTGACAGGCATCTGCCACCAAGCACACACCTCAGCCCTGCCCTGCCCTCTTGCACCAGGCAGCCACAGGACAGCTGTTTTTTTCCCCATAGCCACAAGGTTCAGTTGCTACAAAGGTTTTTTCCTACCGCAG
Seq C2 exon
AACATAACCAATGAAGTGCGTCGCATCGAACCAGAGAAAGTGAGGAAGATCCAGGACTGCGAGGCCTTCATTGAGTCCGTGCCCAACACTGGCAGTGCCACACTGGTGAAGAACAAGGTGGAGAACACCAACAAGAAGTACGACCGCGTGGTTCAGCTGCTCAGTGCTGCCCAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201:ENSGALT00000003446:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=NA C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGCATCAGTTCAGGGC
R:
TTCTCCTGGGCAGCACTGAG
Band lengths:
337-1088
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]