RnoINT0116055 @ rn6
Intron Retention
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10677139-10679463:+
Coord C1 exon
chr10:10677139-10677296
Coord A exon
chr10:10677297-10679284
Coord C2 exon
chr10:10679285-10679463
Length
1988 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
TGCGGTCTTGATCCCTGTAGAAC
3' ss Score
7.67
Exon sequences
Seq C1 exon
ATGCCTCCGATCTTCAGGGGCGACAGCTGCTGGCTGGCTTGGACCAAGTGGCCAGTGACCTGGACCGGCAGGAGAAGGCTATCACGGGGATCCTACGGCCACCCCTTGAGCAGGGACGGGCAATAGAAGATAGTGCTGAGCGGGCCAAGCACCTCAAG
Seq A exon
GTATTGCCAGGCTGGGGTTCCTGCTCAAGGCTCTACCTCGGTGGGGTCTTGGGACATTCAAAGCACAGGTGTTGGATAACTAGAGAGGTAGTGGAGGGTTGTCTCAAGGATCAGGCTCTAACTAGATGCCCTTCCTGCTACTCAGGCATACCCCCAGATATGATCTGGTTCTGCTTTTGAGTGGCTTTTCAGCCTGGTATCATGGCCAAAATGACAGCAGGAACTGGGGTCCTAGCAGGTCCCTGCTGAGGGAGGCTGTGGGCAAGAGGTATGTGGATTGGCTGTGGAATTGCAGATCCAGTTCACTTCTGCTTGGGGGCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCTTCGTCCTTGCTTCTTTCTTCCTCCTCCTCCTCTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCCCTCTGTAGACCAGGCTGGCCTCAAACTCAGAGATCTGCCTGCCTCTGTCTCCTGAGTGCTGAGATTAAAGGTGTGCACCACCACTGCCCAGTTCAGACCATTCTAAAGTAAAATGGGCTGGTCCTCACTTGAGCTGCTACACCAGGCAAGGTGTCTATGTCTCCGTTCACCACTACTTACTCTCATGTCCTTCTGCTGACAACTCTTCGTGGTAGGGTCTGCCACCCCTGTTTTAGAGTCAGAAAAATTCAGTGGTGTCCAGTACCTGGCACAAGAGTGAGGGGCAGAGGCACAGGGGCACAGGCCAAGAGGATGACAAGACTCCTAGCTCTGCGGAGGCATGGGATGGCAGGTTGCCCAAGATTCCATGAATCCTTTCATGAAGGGTAGATAAAGTGTCCAGTATCCAGTGGCAGCCTGCTGTTGTCTGAGTTACAGACTTTAACAGTTCACTCGTACCAGATCCTCATTAAAATCACAGACCCTGGGACTGAGATTGGTCAGGGAAGTGCTTGCTTTACAGGCAGGAAGGAGGATCTGAACTCAGATACCAGCACTCACATTAAAAGCTGGGCGTGGCGGGACACCCCCATAATTAATTCCACTGCAGAGGAGGTGGGATCATGAGGATCAGTGAGGTTTGCCAGCTGGCCAGCCCAATTGACAAGCCCCGGTTCCTACTAAGAAACCTCAAAATCAAACAAACAAGGGAGGGGCTCAAGAGAGGCTCAGTTTATAAAGTGCCCCCATACAACCATGAGGGCTGAGTTCAGATCCCAAGCATCCATGGCTGGTTTTTATTTAAGATTTATTTATTTATTATATATAAGTACACTGTTGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAACCATCTCTCCAGCCCATTTTTTGGGGGGTTTTGTTCTTGGTTTTGTTTTATTTTGTTTTGTTTTTTTTTTGTTTGTTTGTTTTTATTTTTAAAACCCAGCATGGTTGCACTGGTCCTTAAATCTGACTTTGGATGAAGACTACTCGCCAGTAAGTCTAGCCAATCAGTAAGCACTGCTCTTAGTGAGACACCCTGTCTTAGAAGACAAGATAGTGATCTAGAGAGAACAGACTCTGACCTTTGGACTCCACATTTATACTCACACCAACACACTTCACCCCACCTCTCCCTTCCTCCCCTCCTCTCAAAATAAAAGAGATGGCTCCCAAGGAATACTTGAGGGTGACCTCATACATATAGCCACCCATGAATGTGCACATTTACACCCCAAAACAAAGAAGCCTACAGACTGCCAGGCTGGTGATTGGGCCCCCGATAAACACCCCAGGGAAGTGAGCCTCTCAGCCACTCTCACTGCCCCAGGGCACATCCTTGAAGGAAGAGAACTGTTGGGCTGTGGTTGACCTGTGCGGTCTTGATCCCTGTAG
Seq C2 exon
AACATTACCAATGAGCTGCTACAGATTGAGCCAGAGAAGATACAGCGCACAGCTGAGTGTGAGGCCTTCGTGCAGGCCCTCCCGGGCAGTGGCACCACACCCTTGCTGAAGACCCGGGTGGAAGATACCAACCAGAAATATAAGCGACTGGTACAGCTGCTAGAAGCAGCCCAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930:ENSRNOT00000004026:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTCCGATCTTCAGGGG
R:
TTCTCCTGGGCTGCTTCTAGC
Band lengths:
337-2325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]