GgaINT0013031 @ galGal3
Intron Retention
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14027327-14027951:-
Coord C1 exon
chr14:14027813-14027951
Coord A exon
chr14:14027521-14027812
Coord C2 exon
chr14:14027327-14027520
Length
292 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCTCTTCCCTTTTTCCACAGGCC
3' ss Score
13.07
Exon sequences
Seq C1 exon
AGTTGAGGTGGCCACGCACCTTGAGAAGAGCCTCCAGCAAGGCCGAGATCTGCTGTCCTCATATGAGAACAAACTGGTCACAGACGACACCGTGCCGGAGGACTTGCGGGTGATAGACCGTAAGAAAGAAGAGCTGCTG
Seq A exon
GTGAGTGTTCCCTGCAGCCAGTTTCCTACCCTACTGATGTGTTTCACACCTAGAATTGCTTCCCAAGAGCTGTGGCAGTTGCTGCCCAAGCCCCAAACGTGAATTGGTGGTAAAGGGATGACTGCCCCAGCTGGGACCCCACATTAACTGTGCCCACTTTCAGTTTAGCTCCAGCTTGCTTTTCTCCAGAACTCAGCCAGTCCTCAGCAACACCAGCGCAGTAAATGGGAACCAGTGACAAAAGCCTGGCACGTGTGCAGCCCTGAAGAATCTCTCTTCCCTTTTTCCACAG
Seq C2 exon
GCCATGGGCTCTGAGCTCCAATCCAAAAGGTTCTTGCTCAATGAGGCGGAGCAGAACTTGCTGAGGACCAAGACCTGCTCCAACACCCTGGCCAGCAAGTTCCAGGAGCACTGCCCTGACATTGAGCGGCAGGAAGCCGAGCTCTACAAGCTCAACCAGCGCTTCAACAACCTCAGCAAGCAAATTGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201:ENSGALT00000003446:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGAGAAGAGCCTCCAGC
R:
GCTTGCTGAGGTTGTTGAAGC
Band lengths:
303-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]