RnoINT0116057 @ rn6
Intron Retention
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10679555-10680726:+
Coord C1 exon
chr10:10679555-10679693
Coord A exon
chr10:10679694-10680532
Coord C2 exon
chr10:10680533-10680726
Length
839 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TGTCTTTGCCTGTCTGGCAGGCC
3' ss Score
8.9
Exon sequences
Seq C1 exon
GGTGGATGTTGCCAACCGCCTGGAGAACAGTCTGCAACGGGGCAGGGAGCTGCTGGCCTCCCACGAGAACAGGCTGATGCAGGATGACACAATACCTGAAAGTGACTACATGTTGGACAGCAAGAGGCAGGAGCTAGAG
Seq A exon
GTAAACCCACGATCTGGGGACCATGGGGTCCTTTCTCTGGGCTTGGGACATCTGCCTCCATCACCAGATGAGGATGTGAGGGCCCTGAAGATTTGGAGTTCTCAGTGGTTATAAAAATAGACAGTTCCTAGGGTCCGTGCAGGCTGGGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGCTGGGAGCTTTTATTTATTTTTTTTATTTTTTTTTCAGAGCTAGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCACTCTACTACTGAGCTAAATCCCCAACCCAGCTGGGAGCTTTTAAAGCCACTATTTCACAATAGAGGGTTTATAGAAAACACAGGTTTCTGAAGCTCATGGTGAGCATATCTAGCAGCTTGGGCCTATAGCTTCTGGGTAGGTGCACAGCCACTGTCACCAGTGGCCTAGGACACAGGCTTGCTCATCTGAGCACTGAGGCACTTCAATAGTGGCCTGCAGCAATCTTCTCTGTTTCCTTCTCATGACCAGCCTTGGAGCAAAGAAAGCTGGCTCAGGGAGAGCCTCATGGCTGGAGAACAGTGGGCACACATGTCACCCCTTTAACAGTTTGCCAAAGGTGACTCGTCAGAGTTGTATTTATTGTAACGAAAAGGAGCATTGCAAAAGTGGCCCAGATTTGATAAGTGTGGAGACCAAGACCTCCCTTCCTGCTCTAAGGCCTGAACCTCTCCTCAAAGCAGGAGGCCCCAGTGTTCTAGGGATGCTACCAGGCTCTGGCTACAACACTGTTGTCTTTGCCTGTCTGGCAG
Seq C2 exon
GCCATGGCTTCTGAGCTGCAGGCCCAGAAGTCCCTCCTGGGTGAGGTGGAACAGAACCTGCAGGTGGCCAAGCAGTGCTCCAGCTCACTGGCCAGCCGCTTCCAAGAGCACTGCCCTGACCTGGAGCGCCAGGAGGCTGAGGTACACAAGCTCAACCAGCGTTTCAACAACCTCAATCAGCAGGTGGAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930:ENSRNOT00000004026:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=NA C2=0.415
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTGCCAACCGCCTGG
R:
CGTTCCACCTGCTGATTGAGG
Band lengths:
326-1165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]