GgaINT0013490 @ galGal3
Intron Retention
Gene
ENSGALG00000007762 | CREBBP
Description
NA
Coordinates
chr14:13229948-13231247:-
Coord C1 exon
chr14:13231194-13231247
Coord A exon
chr14:13230073-13231193
Coord C2 exon
chr14:13229948-13230072
Length
1121 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTTTGGGGGTGCATTTGCAGGAA
3' ss Score
5.91
Exon sequences
Seq C1 exon
ATGGGCCTATGTCCATGACAACTGTGCCTATAAGTCGTATGCAGGTTTCTCAAG
Seq A exon
GTATCTATGTTTTCTTCTCTAACAACACTTTGTGGGTGTAAAATAAAGCATTAGGGGAAATGCTAATCATCAGTTTTTATCTTGGAATTGCACGTTGGAGGTGGGGGGGTGTGCAGGGACTACTGGGTCTCCCTGGGTCTCCCTTTTTCAGCATCGTTCCTTGCTGTTACTCTGAGACAGTAACAGTCTCAGTGCAGTCATAGAATCATAGAAACCTTAGAGTTGGAAGGGACCTCTGGGGGCTATCTGGTCCAGCTCCCCTGCCATGCACAGGGACAGCACAGCTAGGTCAGGTTGCCCAGGGCCTGATCCAGCCTTGCCTTGAAAGTCTTCAGAGATGAGGCATCAACCACATCTCTGGGCAACCTGCTGCAGTGCTTCACCACCCTCACCATAAAAAATTTTTTTCCTTATATCCAACATAAATCTAAGTCAGTATGTACTCAATACTTCACTAGTGACTGGGAATTAGTTCAGTTGTTTCGAAAAGAGGAGAAGGCAGGGAGAAATAGTAGAGATAATCTATGATTTAAAGTATGTTAACTGCAGAGCAGGAGGGCTGTGGTATGTTTTTATCATTAAATAAGCCCCAGATACACCTGTAGCTGGAAACCTATCACTTTAGTCTGTAACTGATGATATTCTGTCTTGGTTTCTGGTGAGAAAGTATATTTTAAAAGGCATTCTTGTTTTTTTCGTGCAACTGATGTTAGCCATCACTAATTTAGGCTGCTATGGGATCGTGGGTAGCTTTTTCCCAAAGAGTCCCAGTCTCAGATGCACAGATGTTTCATTTTCCCCCAAAAGAGTATCCCCAATTACTTTATGTCAGTAAACTATGCTATTATATACATATAGCATCGTGTCTTTACAGATCATCCACTCTCCTCATCAGTTTTAAGTCACCATTAGTTATACACTCCCTACTTGGCATTCTTTAAGTATTTTTCACATCTTGGTTTCTCTCTTAAGCCAAGTAATTTAAGCAGCATTCAAGGAAAAAGGTGATGTGGAGGGCAGTTAAATTTTAGCCATAAGAAATGTGCATTTTATAATAGAGTATACATAGGTAATTTGTGATGACTTGTTCCTAATGAGTTGTTTTGGGGGTGCATTTGCAG
Seq C2 exon
GAATGAATCAGTTTAACCCCATGTCCATAGGGAATGTACAGATGCCACAAGCACCCATGGGACCCCGTGCAGCTTCTCCAATGAACCATCCTGTACAGATGAACAACATGGGCGCTGTTCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762:ENSGALT00000012587:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]