RnoINT0041921 @ rn6
Intron Retention
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11683115-11685156:+
Coord C1 exon
chr10:11683115-11683159
Coord A exon
chr10:11683160-11685031
Coord C2 exon
chr10:11685032-11685156
Length
1872 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
AATATTATAACCCTTTATAGGAA
3' ss Score
6.11
Exon sequences
Seq C1 exon
ATGGGCCCCTGTCTTTGCCAGTGAATCGTGTGCAGGTTTCTCAAG
Seq A exon
GTATTTATTTATCATTGGCCATATTTTAGCTAACATTCAGCAGCATCAAATGTGTCTTCCCCCACCACCCCCTCACCCTGCTCCCCTTTTCCCTTTTGTGTTCTTTCTGTTCCTCTTTCTGATGAGATTGTAATCCACCAAATAATGTTAGTCTCTTGTGTTTAAAAGTTTGGAAATTATAGGAGAGTTTTCTAAAGAGGTCAGAAATAGGATTTTGTATTGACACACAAACCCACCGCCAAAACAGCAGTGAGATTAAAATAAACATATTCTAGGAAGGAAAAGAGTTTTCTCGAATACTCAGCTGGGGAGTCTGTGAGCCAGTCTGCGGCAGGCATTGGGGTGAGAGTGGGGAGACTGAGAAGATACACTGCTGCTCCAACCCGTCAAAACGGAAGCTGGTGAGCAGGTCTCAACTGCAGGAGGCTGTGTGCAGAGCTCGGTGCCTTCCTGGAGTAGTGATAGCTGTCTAACCAGAGAAGGCTCAACTCAAGATTCTCTGGTTATTTGAGCTCCAGGGCTTTTCCGCTCTTGACATACTAAGACCTGAACAGCAGGGTATTTCTAGCAGGTGAAATAAAATGGGAGCATTGCCCAAATGGTAAAGGAAGTTGTTGCAGTCTACAGGTGAGTTTGAGAGAGAACGGTACATGATTTAAAGTTGTGACAGTGTTACTGCTTACTGAGACAGCCCTGGATAAGTTGGCCAAGAACTTGTTTGAATGGATTGCATTTGAGGAGGGGTGAAGTTAATGGTTTAAAACTGAGCCATAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCTGAAAAAAAGAACCAAAAAAACAAACAAACAAAAAAAAAACTGAGCCATAGCAGTGTGGTGAATATTGTTGGGGACAAGGGCATTGCTAACTTGGGGTCTGACAAGGTGACTAGTAAGCTGCAGGTGACAGATGTTTTCTGGGTCATACTTACCAACATTTTTGCTGAGAATATCAGTACCTGTGAATGTGGATTACTTTTCATGTTATTTTTTAGTATCTGCACGGTACGGAGGGGAGACGTTTACATTCATTGTACACTCCCTAGAAAGTCTTGTAGGAATTTGGCCATTTGCAGGTGGTGGTTTTGGATAGTTGCTGAAAGTGTAAGAAGTTCCTTTTTGGTCATAGCAACGGTAAGGCAAGCTTCTCAGACACTTCAAGGATTCTGTTAGATTGTAGTGTTGGGCAGAATATCATCCTGAACTGAGATTTTATTTAGAACCCACAACTTGCATAGTTTCTATACAAAGTTCATAAGAACTAGCCCCTGCGATCTGAAGATACTTCTTAGCTAAGCCTTTGGCATTGGTGTGGTATTTCTGCAAACTATTAAGTCTAAGGGTAGCCCTTAGGCACTATTTACTAAAGATACTTGTAAAATTGAGAAGGTGTTTTGAGTTCTTAGCACAGATTCTAACTGTAGTATCACCTTAGCCAAGGAGCTTGGAAGCCTGGAACAATATGAGCCAGTTGCTGCTAGGGTCTTTAGGGTGTGCTCAGATAGATGGGGCAGGCTTAGTGCTGTACAAAGCTTCCTTGTCTGTATGTTGCTTCTGTGTTCTATGCACATTAGTTCTAGTTAGTTCTAACCTACAGTAGTGTTCTCATCCTACTCTATCTCCCCCAGCCCTCCCACCTACTGCTCCTGTCAAATATGGAATGGCTACTGTACTCTGCTCTGCTTCCCTTGTGGGTTCCTCTCTATTGTCTACTAACCATAAGTTCTGTCTTAAGAGTTTATTTGATGAGTTCGTTTCTTTTCTTGTGAATGCTTTTGTTAATGAAATATTATAACCCTTTATAG
Seq C2 exon
GAATGAATTCATTTAACCCAATGTCCCTGGGGAACGTCCAGTTGCCACAGGCACCCATGGGACCTCGCGCAGCCTCCCCCATGAACCACTCTGTCCAGATGAACAGCATGGCCTCAGTTCCGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330:ENSRNOT00000007079:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]