GgaINT0013830 @ galGal3
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15747885-15749194:-
Coord C1 exon
chr14:15749089-15749194
Coord A exon
chr14:15748064-15749088
Coord C2 exon
chr14:15747885-15748063
Length
1025 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
CTATTATTTTCCATTTGTAGAAG
3' ss Score
8.92
Exon sequences
Seq C1 exon
GTATTTAAACATGTACAGGAAATACAGCCATCTTTTGAACAACAATGCACAGCAAGATGTTACAGATTTCTTGAATGGAGGTCCATCCTTAGGAGCTTTAAGAGAG
Seq A exon
GTAATACATAACTGGCAAGTGCTGTGTGTTCAGGCAGGAGCTAACACATCACACCCATAGGTCACTTCAAAAGTAATGCCCGTGGAAACTACAACAGATACAAAGAGCACAGTAATGCTATTTGATAGAGCAAGTTCTCAGCTACAAAACGCTGCTTTTCAACAGTCACCACCATTAGCTGTGTGTTTTCACCAGCAATGAACACGAACTGTGTACTGCACCCATGAAATTCTGCACAGAGGTGCCCCACTGTCACTGTCACCACTGCTGAAATGCAGCACCCACCTCTCACTGTGCCAACACCCACTGCTGGGTCTCCATAAACATTCATAACTGTAGATGAATGTCAGTGGGTGCCATTTTTTGTGCATGAAGGAATGCAGTGACACCCGTTTGCTTCATCTGCACTTCCATGTCAGACACCATTCTGTCGGAGTGCCCCCTTCTGTCAGATCTGTCACACAGCAATAAAAAGTAATGGAGTGTTGGTGGGAAGGTTCAACCTCTGCTGCCATCCTACCAACATCCGCATCTCTCGACATGGGCCATCACAATAAAACAGGAGGCATTACTTCTGGAGCAGCCCTCATACATTGCTGTTCTGAAGAGTTTCAATTCAGATGGTTTGTTTTACCCTTGGGAACACCTGGGAATCCACCTCAGTTTACTTAGTCCCCTACTCCATAAGGCTGCTATGCTGATGGATATTTCTCTCTGCTCCTCTTCTCTGAGTTTTTGTTGGATGAGGCGCCAGGCAAAGGCTGTCCAGAGTACATGGTGAATCTGGATCTCGCTGGTCTATTGGCTGTCTTGTCCTTAGCCCTGTCTATTTTCTTTGCTGCATTCGTGAGTTAACCTCTGCTTGAATACTTCCTGAAGCATCTTCTGGTGTTCCTTAATACAACATTCTCACGTGCGAAGACTTCAGCTCTGTTCCCTTGTTGGGAATTAATTAGCTGTTGTTTAGCATCTTTGATCTGTAAGCTTGAAGGACAAACATTGAACCTATTATTTTCCATTTGTAG
Seq C2 exon
AAGATTGACAGCTTAACAGAACTGAAAAGAGAGATTGCTTCCATGCGTGTCACTGTCCCTCTGGCCATGTTCTGCCTGGATGCTGCACAGCTGAACGAGGAGCTCTGCGTTCGGACTCAAAATCTTAGAGATGCATTGATTGAATTTGAGGTGATGGAAAACAGGGAATTAAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAAACATGTACAGGAAATACAGCC
R:
TATTTAATTCCCTGTTTTCCATCACC
Band lengths:
278-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]