HsaINT1011454 @ hg38
Intron Retention
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:21111626-21112098:-
Coord C1 exon
chr16:21111993-21112098
Coord A exon
chr16:21111805-21111992
Coord C2 exon
chr16:21111626-21111804
Length
188 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
GAATGTGCTCCTTTCTGCAGAAG
3' ss Score
8.68
Exon sequences
Seq C1 exon
ATATTTAAATGTCTACAAAAAGTATGTTGACTTATTGGATAACACGGCAGAGCAAAACATCGCTGCGTTCCTGAAAGAAAATCATGACATTGATGATTTTGTGACG
Seq A exon
GTAGGAAATGCCACTTGAGATTTTATACCTTGGTGACATGTGCTGCAGACAATCCAATGAGCAGTTAGTGTCTCTTTGGTGCATAGACCATGCTCAGCATTGGACTAGGGTTGGCCAGGGGTTAGGCTGGGGGCAAGTGGGAGAGGCTCAAGGGCAAATCAAGCTACTGAATGTGCTCCTTTCTGCAG
Seq C2 exon
AAGATCAATGCCATAAAGAAACGGAGAAATGAAATTGCATCCATGAACATCACCGTGCCTTTAGCCATGTTCTGCCTTGATGCTACGGCCCTAAATCATGATCTCTGTGAGCGAGCTCAAAATCTTAAAGACCATCTGATTCAATTCCAAGTGGATGTAAACCGAGACACCAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486:ENST00000261383:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAACACGGCAGAGCAAA
R:
TGGTGTCTCGGTTTACATCCAC
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains