DreINT0009329 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39565168-39565548:+
Coord C1 exon
chr24:39565168-39565264
Coord A exon
chr24:39565265-39565369
Coord C2 exon
chr24:39565370-39565548
Length
105 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TTCTGTTTGGGCACCTGTAGAAA
3' ss Score
5.06
Exon sequences
Seq C1 exon
GTATCTGGAGGTATATAAGAAGTACACTCATTTACTGGATCATCAAGACATAGTGAACTTCCTTAAAACCAAACACTCACAGCAGGGCTTTACTAAG
Seq A exon
GTGAATTTTGCATTGCAATGCAGTCTTATGGACAACACATAATTAATAATAATAATAGTTATCATAATAATAGTTAATATGATGTTTCTGTTTGGGCACCTGTAG
Seq C2 exon
AAAATTACGGCTGTGCAGAACGTGTGGAAAGACATCGCATCACTCCATGCAACAGTTCCGCTTTCCCTGTTCTGTCTGGATGCAGTGAATCTGAACCAAGATCTGTGTGACAAGGCAGAGCATCTCATTGAACTTCTCACCACATTTGTGATGGAGGAGAACCGAGAACTCAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCATTTACTGGATCATCAAGACA
R:
TGAGTTCTCGGTTCTCCTCCA
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]