HsaINT0049678 @ hg19
Intron Retention
Gene
ENSG00000158486 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:2949]
Coordinates
chr16:21122947-21123419:-
Coord C1 exon
chr16:21123314-21123419
Coord A exon
chr16:21123126-21123313
Coord C2 exon
chr16:21122947-21123125
Length
188 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
GAATGTGCTCCTTTCTGCAGAAG
3' ss Score
8.68
Exon sequences
Seq C1 exon
ATATTTAAATGTCTACAAAAAGTATGTTGACTTATTGGATAACACGGCAGAGCAAAACATCGCTGCGTTCCTGAAAGAAAATCATGACATTGATGATTTTGTGACG
Seq A exon
GTAGGAAATGCCACTTGAGATTTTATACCTTGGTGACATGTGCTGCAGACAATCCAATGAGCAGTTAGTGTCTCTTTGGTGCATAGACCATGCTCAGCATTGGACTAGGGTTGGCCAGGGGTTAGGCTGGGGGCAAGTGGGAGAGGCTCAAGGGCAAATCAAGCTACTGAATGTGCTCCTTTCTGCAG
Seq C2 exon
AAGATCAATGCCATAAAGAAACGGAGAAATGAAATTGCATCCATGAACATCACCGTGCCTTTAGCCATGTTCTGCCTTGATGCTACGGCCCTAAATCATGATCTCTGTGAGCGAGCTCAAAATCTTAAAGACCATCTGATTCAATTCCAAGTGGATGTAAACCGAGACACCAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-DNAH3:NM_017539:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAACACGGCAGAGCAAA
R:
TGGTGTCTCGGTTTACATCCAC
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)