BtaINT0050489 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018560 | DNAH3
Description
Bos taurus dynein, axonemal, heavy chain 3 (DNAH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099199]
Coordinates
chr25:19146163-19146594:-
Coord C1 exon
chr25:19146489-19146594
Coord A exon
chr25:19146342-19146488
Coord C2 exon
chr25:19146163-19146341
Length
147 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
GAATCTGCTCTTTTCTACAGAGG
3' ss Score
7.68
Exon sequences
Seq C1 exon
ATACTTAAATGTATACAAAAAGTATGATGACTTATTGGATAACACGGCAGAACAAAACATCAGTGAATTCCTGAAAGAAAATCATGAAATCGAGGATTTTGTGATG
Seq A exon
GTAGGAGATGCCACTTGACATTTTTTTTATATCTTGGTTACATGTTACAGACAGTCCAATAGCACTGTATTGGCTGGGGATGAGGCTAGGGGCAAATGCATAGAGGCTAAGGACAAATTAAACTACTGAATCTGCTCTTTTCTACAG
Seq C2 exon
AGGATCAATAGCATTAAAAAGCGGAGAAATGAAATTGCATCCATGCACATAACTGTGCCTTTGGCCATGTTCTGCCTTGACACCATGACCCTAAATTATGATCTCTGTGAACGAGCCCAAAATCTTAAAGACCGTTTGATTCAATTCCAAGTGGATGTAAACCGGGACACCAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018560:ENSBTAT00000024702:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF115273=ARL2_Bind_BART=FE(43.2=100)
A:
NA
C2:
PF115273=ARL2_Bind_BART=PD(25.9=35.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGCAGAACAAAACATCA
R:
GGTGTTGGTGTCCCGGTTTAC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]