HsaALTA1038164-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000158486 | DNAH3
Description
dynein axonemal heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr16:21111626-21112098:-
Coord C1 exon
chr16:21111993-21112098
Coord A exon
chr16:21111802-21111804
Coord C2 exon
chr16:21111626-21111801
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
GAATGTGCTCCTTTCTGCAGAAG
3' ss Score
8.68
Exon sequences
Seq C1 exon
ATATTTAAATGTCTACAAAAAGTATGTTGACTTATTGGATAACACGGCAGAGCAAAACATCGCTGCGTTCCTGAAAGAAAATCATGACATTGATGATTTTGTGACG
Seq A exon
AAG
Seq C2 exon
ATCAATGCCATAAAGAAACGGAGAAATGAAATTGCATCCATGAACATCACCGTGCCTTTAGCCATGTTCTGCCTTGATGCTACGGCCCTAAATCATGATCTCTGTGAGCGAGCTCAAAATCTTAAAGACCATCTGATTCAATTCCAAGTGGATGTAAACCGAGACACCAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158486-23-25,23-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCGCTGCGTTCCTGAAA
R:
GGCACGGTGATGTTCATGGAT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains