GgaINT0014441 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15633465-15634311:+
Coord C1 exon
chr14:15633465-15633545
Coord A exon
chr14:15633546-15634209
Coord C2 exon
chr14:15634210-15634311
Length
664 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TGTGTTTTGCTTATTTTTAGATT
3' ss Score
10.35
Exon sequences
Seq C1 exon
GTGCTTGTCTGTGGAAATTTTAAAGGAATGGAAATTAAACCTGGCTCTATGGGAAAGCCATCACCAGGGTATGATGTCAAG
Seq A exon
GTATGGCACCTCTTGTGGCACTGCCATCTCTCAGATCATCATTTGCCATCAAAGAGTTTTGTGAGCTTTAGCCTGGCACTGTGCTATGCAACATCATTCCACAAGGAATGGAAGTGTGAAACAAGTACGTTACTGTACCAAACGCAGTGTGCAAAGTGAGCAGTCACACCTTCCTCTTGCACCAGCCTCAGTGGGATGACATAGATGACAGCCTAATATTGGATGGGAAGGCAGTGATGAAAGTCAAATTACTGAGTAAACGAAGAGTGAGAGTGAACATATTTCCTTGGGGATAACAGAACTGATGAAGTAGATTCCAGCAATATTTGCAGGATTGTTTGAGCTTTTTAGTACCTTTCTAAGCTTTTTAGTAGCTTCCTCTGTTTTCACACTCATTACTTAACCTCTTTGGGGTCTTACTAACTTCATTACATATTTTCACAGTACTTGGAATTGCTCAGATAAAAAATAGTGTGAGGTAAAGTGGATTCACAGTAATCTAACACTGTAATTTCAGGGTCAGACTCACCTCCAATGCTCCAAATAATTTTCCAATGGATACTTAGAGGAAATGTTTTAAATGAGTATCAAGATTCTATAATATTAACATAATGCTTTTTAATTTGGCTGAAAGATAATAAAGCTGTGTTTTGCTTATTTTTAG
Seq C2 exon
ATTATAGATGAAAACGGTAATATTCTGCCTCCTGGAAAAGAAGGAGAGATTGCCATCAAAGTAAAACCTACAAGACCACTTTTCCTCTTTACTTGCTATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200:ENSGALT00000003444:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.2=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTGTCTGTGGAAATTTTAAAGG
R:
GTATAGCAAGTAAAGAGGAAAAGTGG
Band lengths:
182-846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]