MmuINT0010258 @ mm9
Intron Retention
Gene
ENSMUSG00000030935 | Acsm3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:MGI Symbol;Acc:MGI:99538]
Coordinates
chr7:126921893-126923218:+
Coord C1 exon
chr7:126921893-126921973
Coord A exon
chr7:126921974-126923116
Coord C2 exon
chr7:126923117-126923218
Length
1143 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
ACTGACGTGCTCTATTCTAGATT
3' ss Score
8.99
Exon sequences
Seq C1 exon
GTGCTGATCTGTGGAAATTTCAAGGGGATGAAAATTAAGCCCGGCTCAATGGGAAAGCCTTCTCCTGCTTTTGATGTGAAG
Seq A exon
GTTTGAATGTCCCCTTCCAGGAGAGTGTTTGCTCACCCAACACACCCTCACTCTTTAGATATACCTTAAGTTCTATACCAAAAGAGAATTGGGTGAGAAATGTTGGCTTAAACACCTATATTTTGCCATGGATTCTGGGCATTTACAAGAGTTGATCTGTTTAATGTCCAGAAAAACCCTAAGATAGACTACTAATAACAACATTTTGTAGGTGACTATGCAGAGAAATTAAAGAACTCAGCCAAGTCCATGCAGCTCGGGCCCCTAGAGTGGGAACACAATTTCAAGCAATCTAGTTCCAGTGTCTACACTCTTGGTCACACTGTGTGGAGTCAGGATGGGACCTGCTGCAGGGATCAACCAGGCCCAAGGTGGCACAAGTTCATAGTGGCTGCAGGACACACTTCTCTAGCCGCCTCCTGCCTGGTTCTTCCCGGCTTTCTTTAACTAGGGTCCTTATTATCATCTTATGCTGGTGTAGACAAAGGATTTACACTATGATTTAGATTTAAAAAGAAAGAAAAATAAAAGCAACAGTGGCAAAAGGGATCCATTTGCAGAGGACGAGGCCCAGCCTATACTTAACTGAAGCCTAGCTGGAAGATGAGGGTCAAGGTTTCCCAAGTTCATCAGATCATACAAACGACAAGGCTGCTTGTTTGAAATAGTCTTTCTTATTTCTTTTCCCTGACTTAATAATATGACACAAGAGTCTAGAATCTAGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAAAGAGTCTAGAATCCATGTTTTACAAAGACATATTGCTCAACCACAAAAGCAGGTTGCAGAACTTCATAAGTGATCCTAGTTTTTTTCTGTCTATAAATGTCCCAGAGGACATTACCCAAACATGATTTGGGTGGTAGAGGTAAGGAAATATTTTACCACTCTTTCACATTTTGGCAATTTTCATTTTGTAACATTTTGTACAATAATAATGAGTAAATAATACATTTAACAATTTAAAGTATACATAAAATGGTTTTAAGCTTATATTCTGGCCCAAAAGATTCAAAGCTAAAATTTCAGATATGGCATTAGATAAAAATTCCCTTAAATAAACTGACGTGCTCTATTCTAG
Seq C2 exon
ATTTTAGATGAAAATGGTGCCACTCTTCCTCCTGGACAAGAAGGGGATATTGCTCTTCAAGTTCTTCCTGAGCGACCATTTGGCCTTTTTACTCATTATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030935-Acsm3:NM_016870:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGATCTGTGGAAATTTCAAGG
R:
ACATAATGAGTAAAAAGGCCAAATGG
Band lengths:
182-1325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: