HsaINT1002664 @ hg38
Intron Retention
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20786078-20790688:+
Coord C1 exon
chr16:20786078-20786158
Coord A exon
chr16:20786159-20790586
Coord C2 exon
chr16:20790587-20790688
Length
4428 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
ATTGTTCTATTTTATCCTAGATT
3' ss Score
7.73
Exon sequences
Seq C1 exon
GTGCTAATCTGTGGAAATTTTAAGGGAATGAAAATTAAACCTGGCTCAATGGGAAAACCTTCTCCTGCTTTCGATGTTAAG
Seq A exon
GTTTGCACATCCCCTTCCAGGAGAATGTTTAACAACCCAATCTGTACACTACCTACCTACCGCTTACCCCCATATAAACTTTCTTTGTTATGATGGTGATTCCATTTTACTTCCATGATACTTTAATTTTTATAAATATGTGAAAATGATTAGAAATGTTAGCTTCTTGGTCTCCATTATTTTGCAAATACCCATATTGTACCATACAGTTCTAAGCATTTAATAAACGTTAACCCATTAGGCTGGATGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCAAGGCGGGAGCATCACTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACAACGTGAGACTTTGTCTCTACAAAAAAATATAAAAAACTAGCCAGGCATGGTGGTACGTGCCTGTGGTCCCAGCTACTCAGAAGGCTGAGATGGGAGGATTGCTTGAGCCTGGGAGCTTGGGGCTGCAGTGAGCCATGATCACACCACTGCACTCTAACCTGGGCCACAGAGCAAGACCCTGTCTCTAAATAAATAAATATTAACCCATTGAATTTCCAGAAGAAACCCTATGAGAAGCATACTAATATTAGAACCATTTTACAAACAAGGCACAAAGAGGTAAAAGAACTCACCAGAAGTCACACAGCTAATAGCTGCTAGAGTTGGGATTCAATCCCAAGCAGTCTGGCTCCAATATCTGCACTCTTAACCACAACACAACACTGGTCCTCTCAGGCAAGGGAGGTCAAGACCTTCTGAGCGGGTCAACTAGGCCCGAAGAGGCTTCAGTTTACAGTGGCTGCAGCACTTTCCCTCTCTGCTCCCAAGCCTGCCTGGCCATTTCCAGCCTCTCTGTATCCACTGCCACTACTACCACCTGATGCCTAGGGGGAATTCCAGTTCCCCATCAGCAAGCTTTATATAGGGTTAAAATTGTTCTCAGATCAACCGAGCTTCAAAGCTGGGTGTAGCCAAAGGAACTTAACACTAATTTGGACACTCCTCAACTTATGATAGGGTTATGTCCCAAAATAATAAGTCATCATAAGTTGAAAACATCCTAAGTCACAAATGCATGGCTGACTGGGAGCTGTGACTTACTGTTGCTGCCCAGCATCTAGAGAGAAAGATGGTTTCAACTGAATGGTTATCTTTTTCACCCATTGTAAAGTTGGGAAATAGTAAGTTCGAACCATTTTAATTCAGAGACCCATCTGTACGTTAAGAGACAGCAAAAGCAGCAAAAATATGGATGAATTAACAGAGTACAGCTCTTAGATAAATGTTTCCCAAGCTTGTTTGATCATAAACATCATATGGATATCTGTTAAAAATACTAATTCTCAGGCCCCTGGAGAGACCAATTCAATAGATTTGGAGTGGAACTCTGAAATTTGAAATCTTGTGATTTTAACAAGCACCCCCCAAGTAGTTTTTAGGATCAAATAAGTTTGAGAGAGTTTAGATGAGCTTGATTGCTGCTGTAACTCTTTATAGAATAAACCAGATCCTGGGTCCTTTCTCTCACTTTAACCTTGCTGTGGAAACCTGGTCTCAAGATAGGATAGCCTAGTGGTTCAACTATATCTCTGCTATTCACTGTCTGAGTGTCTGTGGGTACACTGTTAAAGCTCTGTAAGTTCCAGTTTCCTAATTTGTAAAGTTGGGACTAGAGTGACCAACCTGTCTGTTTGCCTGGGACTTATCTGGTTTTAGCACTTAAGGCAATACATCCTGAAGAACCACCCCCCGACAACCCCTCACCACTTCAGTCTCAGATGGTTGGTAAACCAAATAATAACAGAACTGATTTCATAGGTTTCTTGTGGTGATTAAAGGAGACAATATGTTTAAAGAGCATATCAGAATGCTTAGTACATAATAAAGGTCCAAAAGATGGGTACTGTTATTTACTTCTCCCTCACATTCCTCTTTTTATTTATTTATTTATTTTTTTATTTTTTCACATTCCTCTTTGAAAAGCTTATCTAAGAAAAAATGGTAGGAGAGCCCAAACAGGCTTAACAATAGTTTGTTGGTTAACAGGCTACCTTAGGTTGAAGAAAGAAATATTGATAATTAAGCACACTCATGTCTGCATTACAGGGAAGTTGATATGTAACACAGCTATGTTCTTTTTCTTCCTTCCTTAATAGCAATTCCCAACATGCATGGCTATCAGGGTCTTACAGGCACAGCTGTATTCACAGTGATCCCAACTGCAAGGTACCCCCACCTGCTCCCCATTAATTTGAGCCCAGTGGTTTTCTAGAGCAGCTATCTTTGAATGCAAATATGATGAGGCTGAGAGGAAAACAGTACTTTTTCTGCATCCCCAGTCATTTTTAACTCTTTTCCACGGGCCGTTATTATGGGGCTTCTTGTTCCTTAGCTAAGGGCATCTGCAGTAACATTCTGGCATCTGGGGATGTGTTCCAACCAGGTGAATATCAGATTCCTACAACTTCAAAGCCCAACCTTTATAATCTTCTTTGTTTGCTTTTAAATACTCATAATTTTCATGTTTAAACATTTTAAGACCCTATGAACAATGAGGAACATGATTCTCCCCAGACACAGAAGATTTTATCTATATTCCCATCTATTAAAATCTGTAAGTAACTGGAACTTTTAAAATACTTCCTTTCCATCAATAATTCCTTCATACCTGGAACCACATATTTCTTTAGATAACTGGGTGGGAATTTATATTTTTTTATTTGCAAGAGCTTAAAGAGAAGTTTTTACGCTTAGAATTCCTTTGCCATTTAAGTTTCTCATTCAGCACATAAGCCCCTTTCCTTTTGGAAAGTGCTAGATAAGTATTATACTTATTCTCCATGCAGGCCACACCTCAGGTTTGAAGGTATCTGGAGAATATATATAAAAGCAGAATTTTGATACTTAGAAACAGCTAAAAGTCATTTAGAGCAAAATCTGATGTATAAAATCAGCAATCAACTTGAGAAATGCTAATCTGATTTTTTTAATTGGATTAAACTCTCTAGAGGCATTGCACAGAGGAGTGTAATGATTAAAAGCATATGATCTGGAGTGTAAGTGGTGAGATTTGGATTCCAGCTCAATCATGCACAGTGTTAAACTCTCTACACCTCAGTTTCCTCATGTGTCAAATGGGCATAAAAATTCTAACCACATAGGGCTACAGTGAGGAATAGGTACATGTCAAGTACTTAAAGGTTTAGCATTAATTACTTAGCATGTATTAAGTACTTAATAAATGCTAGCTACTGGTAGACACTTCAGGGAATGATGAGGATTGGAGAGAGGGTAAGAGAGCAAGGCTGTGGCTTACTTACCATTGTCAACCAGAGAATATTCCCCTTTTCCTGTTTACTCATATTGGGCTTCTGAAGTAAGGTTCTGTAGGTTCCACAGCTAAACAAAGTTTGAAAACCAGTAATGAAGATATTTATTTATCAAGAGGAAAAGATAATCAAGACCTATTGCTAAATGATAAAAGCAGGTTGGCAAAACTGTATATTATAAAGCAACTCTATTTTTCTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACTCATTGCCCAGGCTGGAGTGATCTCGGCTCACTGCAACCTCCCCATCCCGGGTTCAAGCAATTCTCCTGCTCAACCTCCCAAGTGGCTGGGATTACAGGTGCCCACCACCATGCCTGGCTAATTTTTCTATTTTTAGTAGAGATGGGGTTTCACCATGTTGCTCAGGCTGGTCTTGAACTCCTGACCTCAGGCGATCCACCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACTGCGCCCAGCCAGCAATCCTATTTTTCGATTTATCTATATTGTCTCAAAGGATATTACCAAAATGTGATTATTGCTGGATGGTAAAATTTTTAAAAAATTTTATCCTGCGTTCACATGTTGGTAACCTGTATTTAATATTTTATGCAATAAGAATTTAAGTAAATATATTTCTCTTAGGAATTTAAAGTATATTTAAAATATTTTTGGGCCAGGTGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCTGGAATATCACTGGAAGCCAGGAACCAGCCTGGGCAACATAATGAGTCCCTCATCCCTACAAAAAATAAAAATAAACATTAGCTGAGCATAATGACATGTGCTTGTAGCCCCAGATACTTGGGAAGCTGAGGTGTGAGGACTGTTTGAGACCAGAAGTTTGACGCTGCAGTGAGCTATGAGCTATGATTGCACCACTGCACTCCAGCCTGGGTGACAAAGTGAGACCTTGTCTCACACACACAAAATTTTTTTTAAGTCTTCATTTTTAAATGGCAAAAGCCAAAATAAAACTTGCAAAGTTAATATTTAAGCTGCGACATTAAACAAAAATTTCCTTAAATAAATTGTTCTATTTTATCCTAG
Seq C2 exon
ATTGTAGATGTAAATGGCAATGTTCTACCTCCTGGACAAGAAGGAGATATTGGCATTCAAGTTCTACCCAACCGACCATTTGGCCTTTTTACTCATTACGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187:ENST00000289416:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(11.1=67.2)
A:
NA
C2:
PF0050123=AMP-binding=FE(41.5=100),PF131931=AMP-binding_C=PU(12.7=22.9)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains