HsaALTD1041755-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr16:20789479-20790932:-
Coord C1 exon
chr16:20790850-20790932
Coord A exon
chr16:20790770-20790849
Coord C2 exon
chr16:20789479-20789557
Length
80 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
GGTTTTCAAACTTTGTTTAGCTG
3' ss Score
4.44
Exon sequences
Seq C1 exon
GGTCCCTTCCTCTTGCCTTCGTGGACCTGGAACAGTGATCTGGCCTCAGGGGACCAGCATGCTTTTCTTCAGCAAGAATTTGG
Seq A exon
GTATTTCTTCAATTTCTTGTCTTTTGGATTACTATTCAGGACAACCAATCTCTCAAGAAAGGGTCAAGTACCTATCCTAG
Seq C2 exon
CTGTGGAACCTACAGAACCTTACTTCAGAAGCCCAATATGAGTAAACAGGAAAAGGGGAATATTCTCTGGTTGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-31-38,33-38,34-38-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTTCCTCTTGCCTTCGT
R:
TTGTCAACCAGAGAATATTCCCCT
Band lengths:
159-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains