GgaINT0015052 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7584693-7585598:-
Coord C1 exon
chr14:7585506-7585598
Coord A exon
chr14:7584757-7585505
Coord C2 exon
chr14:7584693-7584756
Length
749 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
GGTCTTCTTTTCCTTCACAGGGC
3' ss Score
10.6
Exon sequences
Seq C1 exon
GGTGAGCTGGAAAAACAGCTTCTACAGGCAAATCCTATTCTTGAAGCTTTTGGAAATGCCAAAACTGTGAAGAATGACAACTCCTCCAGATTT
Seq A exon
GTAAGTAGGAGAAATCCATTTGGGTCTACGCTGTGGGGAGGTACACCATTCTTTAAATCAATGTACAAAGAGTGGCCCTTTTACCTTCAATACTTCTGTCTAAAAAGCTTCTCTAGACCAATCCCTTTGAAATACTGTTGAGAATTTCTCTCTGAAATAGGAATTTGGCCTTTTACAGGACTAAAAGTCAATCTCAGACTGGACAGTACCACTGTACTCTCACAGTTTATTGGTCTATGTGTGGCCTTGCAAAGTCAACTACTGCTCCAGGACATATCATCCTCTAGAAATTAGAAAAGAAAATCCGTACTTCCTTTTTCTTTGCACCACTGTTGACCATGCATCTTGTTGGAAGGTATTCCTGTTATTTAGCAAGAGTGACTTAAATGAAGGACTACAAGAGAAAAAGCATCTCACATGGATTCACATTAGAGTAACAGTAGATGGCAGCTGTAATTATTTGATGCTACTTTTTGTTGGGAGTGCTGGCAGATGTTCCTTTTCCCTGTAGGCCCTTCACTCCTACCTCTGCTGTCTCTCTGCAGAGGGATCCCTCAGATGTAATGCTACTCCCACTTTGACCGTTGTCAGAGTTCATTTCAGCCTGGTTGTCCTGGCAGGAGGGAATTGAGCATGTTACTCTTAAGAGGATGATGTACATGTCCCACTGAACAGCCCACATGCTAATGTTGTAAAACCCAACATAACCTAAAAGAACAGCCCAACCTAGGTCTTCTTTTCCTTCACAG
Seq C2 exon
GGCAAATTTATCCGCATCAACTTTGATGTGACAGGCTACATTGTCGGAGCAAACATAGAGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]