HsaINT0107536 @ hg38
Intron Retention
Gene
ENSG00000133392 | MYH11
Description
myosin heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:7569]
Coordinates
chr16:15778780-15782477:-
Coord C1 exon
chr16:15782385-15782477
Coord A exon
chr16:15778844-15782384
Coord C2 exon
chr16:15778780-15778843
Length
3541 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
CTGTGTTTTCCTGTTGGCAGGGC
3' ss Score
8.44
Exon sequences
Seq C1 exon
GGAGAGCTGGAAAAGCAGCTTCTACAAGCAAACCCGATTCTGGAGGCTTTCGGCAACGCCAAAACAGTGAAGAACGACAACTCCTCACGATTC
Seq A exon
GTAAGTAGCAAAGCCACATGGATTTTCCAGAAAAGCTTTGGTGTCATCTCCTGCCTGGGGCTGCAGAGTGTTTGCGTGCAGAGGTGGGAGGGGCATCTGACCCTGGAGAGATGGGCTGTATCTCACAATCTTGCAAGGGCTCCTGCCTCTCACTCTCTCATTCATTCATTAATTTATTCACTATTCACTCAACAAATATTGATTGGCCTGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGGGTTCTAGACCAGCCTGGGCAACAAAGCGAGATCCCATCTCTATTATTAAAATAAAATTTAAAAAATTAGGTATTGAGCACCTGGTATGGGCTAGACCCTTATATCCGATACCATTTTATGTAACAAAACATGAATTGAGTGCCAACTGTGTACCAGGCACACACCTCCTCCAAGAAATACTTAGTAAGTACCTACTGTGTACAATTACTCTGGTAGGCACTTTTACATGTACCACCATTCTCTTTGTTTTTTTCTCATTTGCTGTTTTTATTAAGTGCCTACTGTATACCAGGCACTCAGCGAGTCTCACAGGATTGCGATGAATAGTTCAGATATGGTTCCAGCCTTCATGAAGCTGGTTCTTCCAACTGAATAACAGAGAGTAAGTGAGGCAGGGGGTACTACCTTCCCATGCACACTCCCCCAGGCTCCAAAGCAAAAAGTTTTTGCCTGAGCCCAACAGGGCAGGGGAACTCTGAAAGTGGATGGTTGATGATAGGTAGACAACAATGGTTTTATTGTGCAAAAGAAGCGGTTGTCTCCGTAGGAGGGTCAGAAAGATATTTTAGTGAGAAAAGATGAAGGAAAAATTGCCTCTGCATTCCAGGAGAAGGGGGTCTCTGAACTGTTGCTCGCTGAGATGGGGCCCTGTGAAAGACTCTTTGCAGAAAGCTCTGCTCTGCTGAGCAAATGCACATGGTGGTCCCTGACCCTGTGATCCCCAAGGCCCATTTTAGTAACAAACAATTACATAATGTCTCCTTTCCTCGCCCGAAATTAGAATCATAGATAGTATCACCTCCTACACGTATTAGATGAATACACATCAGCATAATGCCCTAACTGGAATATGAAGAAGAAATAACATAAGACAATTCATAATGAAAGTGTGCATTTCAGGCCAGGCGAGGTGGCTCATGCCCGTAGTCCCAGTACTTTGGGAGACTGAGGCGGGCAGATCACTTGAGCTCAAGAGTTTGAGACCAGCCTGGGCAACATGGGGAAACCCCATCTCTACAAAAATAAATAAATAAAGTGCATTTCAGCATATCAATGCTCGGGCCAGGCCACACCAACAGAAGACACAGTAAGAGACAGACACTTAGGTCTATCCACGGCGACAGCTACAAATACAAGGAAAAGGGTCAAGTTCAGGCACTGATGATGTTGGCATGGGATTTTCCAGAATGGCAACTGACTCTCAGTGAAGCGCTGAACCAAAGAACAATCTTCTCTAGAGTCACACAGATGGGATATTCTTGTATTAGAACAACATTTTAAACACTTGTTAATGCTTTCATTTAAAAGCATAAAAATCTAGACCAGGCACAGAGTGGCTCACACCTGTAAACCCAGCACCTTGGGAGGCTGAGTTGGGAAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCGCAGTGACACATGCCTGTATTCCCAGCTACTCGGGAGGCTGAGGTGGGAGAATTCCTTGAACCCGGGGAGATGGAGGTTGCAGTGAGCCAAAGTCACACCACTGCACTCCAACCTGGGCGACAGAGTGAGGCTCTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGCGTAAAAATCTAAAGTCATAAAGGTTAGGTTCTAAGCCTGGCTAATTACAAACAGATTTTTACCTCCATGAGTGGCAGGTGAGACATTGGAAGAGTCATAAGGGATATAGACAAGGATTGGCATCAGAGACTCTCCAGGTCATTGCAGGACTCCCAAAATATCCTTGGCCCCACTGTTCACTAACAACAGCGGCCCCCCCCCAACATGTGACAAGCCAAATAATGGCTTCCACCGATTTCCAAAATCTCCATAGCAGATGTGCCGCCTCCACTGAGAAGCACTGCGTTTGCATGTTCCAATTCTGTGCAATGTTTCTAGCCTGTCATAAATGGAAGCACGTGCAAGACAAATCCCTAAAAACATCCTCCACTCACTGGCGTCCCTGCCATCTTGGGAAGGAGAGTGAAGAAGGTGCCTGGGCCTTGCCTGTGACCAGCCGGCTCTCCCTGGCTCCATCTGGGATATGGTCATCCCAAATCACTCTACTGCATGTTTCCCAATGGGGAAAGTTTGAAGGTTTTGTCAAGGACTGAGCAAGCCTAGGGGATTGTGTCCACACACGCCAACACTTCCCACCATGTTATGTCATGATGGGGGAAAAGGATGAAATCCTGTCTCACCTGTTGAGGAAACAGGAAAAGGGTTCATGCCAACAGATGGAGGATTGGGTTCCATCCTTGGTTTCATGGCTTAGCTGAGGCAGGTAGATAGGGCCATCTTTGGAGATACTTGTTGAGCCTCTAGGGCCAGGAACATGAGCCATTCCTGCCTAAAGGACATCCTACACAGGGCCTGCTTGGGCAGTGTGGCCAATGCATACTCACCTGTCCCACAGAAAAGGTTTAATCCATAGTTGGATGATGTGGATGTTTTGGAGCAGGGTGGGGTCTGGGGAGGGAGCCCTCTAGCCCCTGAATATGGAAAAACCTTCTTTCTGCTTAGGGCCCTACCTCTCAGGAGCAACGTCACGTTGGACAAGTCACTTGATCTCTTTTAGCCTTAGTTTTCCCAGCTTTAAAATGGGGATAGTGGGCTGGGTGTGGTAGTTTACTCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGAGGATTGCTTGAGTGCAGCAGTCTGAGGCCAACCTGGACAACACAGTGAGATCCTATCTCTACAAAAAAAAATTTAAAAATTAGCCAGATATGGTGGTGCATGCCTGTAGTCCTAGCTGCTTGGGAGGGTGAGGTCATGGGGAAAAGGGGATTGCTTGAGCCCAGGAGTTCAAGGTTACAGTGAGCTGTGATTGCACCACTGCACTCCAGCCCTCGCTGACAGAGCAAAACCTTGTCTCTAATAAATAAATAAGTTTTTTTAAATAGGGATAGCCATGATGGACTACGGTCATTGCAAAAGCCGAATGAAATTGATCTGTGAACATGTTTTACACGTTCTGTTGCTGTCAGGCCTGGGGTGGTTTCAGCTCAGCAGATGTTGGTTCCGCCTGACAACTTGACCTGTGGGGTTCTGAGTGTTCGCAAGAATCTCCCCGCCCCACCTCCCATCCTCTGTACCATCTGCCTCCTGCTTGCCCACAGCATGGGGTTAACGGCTGAAGTTGGGCAGCAAAGCCTGAACTGTGTTTTCCTGTTGGCAG
Seq C2 exon
GGCAAATTCATCCGCATCAACTTCGACGTCACGGGTTACATCGTGGGAGCCAACATTGAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133392:ENST00000300036:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development