GgaINT0015063 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7643013-7643319:-
Coord C1 exon
chr14:7643198-7643319
Coord A exon
chr14:7643083-7643197
Coord C2 exon
chr14:7643013-7643082
Length
115 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGA
5' ss Score
6.86
3' ss Seq
ACATCTGTGTCTTCTGGCAGATA
3' ss Score
10.74
Exon sequences
Seq C1 exon
GCTGGCAAACTTGATGCCCATTTAGTGCTGGAGCAGTTGCGCTGCAATGGTGTCTTGGAAGGTATTCGTATCTGTCGGCAAGGGTTCCCCAACAGGATTGTCTTCCAGGAATTCCGTCAGCG
Seq A exon
GTAGGAATCCCTTGCTCAGTCCTAACTTAGGGTTTAAAAGGGCTTGTAAACATGTTTGCCTGTACAAAATAATCTGACATTTTTCCACCTCTCTAACATCTGTGTCTTCTGGCAG
Seq C2 exon
ATACGAAATTCTTGCTGCAAATGCTATTCCTAAAGGATTCATGGATGGGAAGCAGGCTTGCATACTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACTTGATGCCCATTTAGTGC
R:
CAAGCCTGCTTCCCATCCATG
Band lengths:
178-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]