MmuINT0103262 @ mm9
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14223909-14224192:-
Coord C1 exon
chr16:14224071-14224192
Coord A exon
chr16:14223979-14224070
Coord C2 exon
chr16:14223909-14223978
Length
92 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
CTTCTGCCCTGTGTTTTAAGCTA
3' ss Score
8.33
Exon sequences
Seq C1 exon
TCTGGCAAGCTGGATGCATTTCTAGTGCTGGAACAGCTGCGCTGCAACGGTGTGTTGGAAGGCATCCGCATCTGCCGTCAGGGCTTCCCCAACAGGATTGTCTTCCAAGAGTTCCGGCAACG
Seq A exon
GTAAGCCTGCTGAGGAGGGGTAGTATGGAGCAAGCCTTGGGGAAGCACAAATGATGGAGATGTGTTGGGTGACTTCTGCCCTGTGTTTTAAG
Seq C2 exon
CTATGAGATCCTGGCAGCGAACGCCATCCCCAAAGGCTTCATGGATGGAAAGCAAGCCTGCATTCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-Myh11:NM_013607:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAGCTGGATGCATTTCT
R:
CCATCCATGAAGCCTTTGGGG
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: