GgaINT0015369 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15224663-15226872:-
Coord C1 exon
chr14:15226697-15226872
Coord A exon
chr14:15224743-15226696
Coord C2 exon
chr14:15224663-15224742
Length
1954 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
GTTGTTGCTTCACTCACTAGACA
3' ss Score
4.95
Exon sequences
Seq C1 exon
TTCTTTTTCCTGCTGTTAGGTACTGGTTGGATGTGGCTCCGTCAAACATAGTGTGGGGCATTACAGACACAGGCTGGATAGTAACTTCACTGACATCTGTATTTGATGCCTGGGCTTTGGGATCATGTGTCTTTGTCCACCAGCTCCCACAGATTGAATCATCAGTTATCCTAAAT
Seq A exon
GTAAGAAAAACTTACGGAGGTGTGTAAACATGCAGAAAAGGAACAGAAAATAATTTCTAACTGCATAGAAAGATTTAACGAGTGTTGTGTCCACTGTTGTATTCAAGGTGCTCTATCCTTCCATAAAATCCTATTCACTTTTAAATGTACATAGAAGGGGACAGTCCCAAGATACTTTCATACATTTTGCTTATAGCTGATGAGCACGTGGGAAAATCATCCCAGAAGCAGTACTAATTACATGCCTTTGTTCCAGTAACCATGGGGGGTAACATTAGCTGATATTAATGCAAGCAAAAAATGATTTTCTTGGTGGCCAAGATGAAAGTCAACCCCACCTGGAGTACTTTGTCCAGTTCTGGGGCCCCCAATACAAGAAGGACATGGAGCTGTTGTTGGAGCAGGTCCAGAGGAGGACGATGGAGATGATCAGAGGGCTGGAACACCTCTCCTATGAGGACAGACTGAGAGAGCTGGGGCTCTTCAGCCTAAAGAGAAAGCGCTGGGGGGATGTTATAGGACTTCCAGTACCTGAAGGTGCCTACAGGAAATCTAGGGAAGGAATTTTTATAAGGGCAGGTAGCAACAGGATGAGGGGAAATGCTTTTAAACTGAAACAGGGTAGATTTAGACTAGATATTAGGAAGAAATTCTTTACTGTGAGGTCAGTGAGACACTGCAACAGATTGTCCAGTGAGGCTGTGGATGCCCCCTCTCTGGAAGCACTCAAGGCCAGGCTGGATGGGACTGTGAGCAACGTGGGCTATGGGAGGTGTCCCTGCCTACAGCAGGGGATTGGAACAAGGTGGTCTTAAAGGTCCCTTCCAACCCAAACCATTCCATATAATACAGACAGGCTTATTCTGTCCATGCTCTCAGCTGTCTGGGCAGTCTGGGTTTCATGTAGACAAGAAAGAATGGAATTTTTTCCAAACATACTGTGATTTTCTACCTGTTGTGCCAAGGCTGGATAGCTGGGCAGGCTGGATAGCTGGGCTGAAGCCAATGGGATGAGATTCAACAAGACCAAATGCCAGGTCCTGCACTTTGGCCACAATAACCCTAGGCAACACTGCATGCTTAGGGCAGAGTGGCTGGAAGACTGTGTAGAGGAAATGGACCTGGGGGTGTTGATTGATGCTCGCCTGAAGGTGAGCCAGCAGTGTGCCCAGGTGGCCAAGAAGGACCATGGCATCCTGGCTTGTATCAGAAATAGTGTGGCCAGCAGGAACAGGGAAGTAATTGTCCCCTTGTCCTCAGCACTGGTGAGGCCGCACCTCATGTACATCAGTACTGTGTCCAGTTTTGGGCCCCCTGGCTGTAAGAAAGACATCGAGGCCCTGGAGCGTGTCCAGAGGAGGGCAACAAAGCTGGTGAGGGGTCTGGAGCACAGGCCTTATGAGGAGCGGCTGAAGGAGCTGGGATTGTTCAGTCTGGAGAAGAGGAGGCTCAGGGGAGATGTTATTGCTCTCTATAACTACCTGAAGGGAGGTTGTAGTGAGCTGGGGGTCAGCCTCTTCTCTCGTGTGACTAGTGATAGGACTAGAGGGAATGGCTTCAAGCTGCACCAGGAAGGTTCAGGCTGGATGTTAGTAGGTACTACTTCTCTGAAAGGGTGGTCAGGCACTGGAATGGGCTTCCCAGAGAGGTGGTGGAGTTGCCAACTCTGGAGGTGTTCAAAGAACATTTGGATGTTGTGTTGAGGGACATGGTTTAGTGAGAACCATTGGTGATGGGTGAATGGTTGGACTGGATGATCCTGTGGGTCTTCTCCAACCTTAGCGATTCTATGATTCTAAGGGTAGGAGGGTTTCTTGCCCAGCAGAATGTACCTTCTGCTTTTACATAAACGGAAGAGCTACATTTGACCCCTACACCACCGTGCACTGTACATCCAGAAGACAGCTTTTGTTCTCTTGAGTTTCACCTGTTGTGTTGTTGCTTCACTCACTAG
Seq C2 exon
ACACTCTGCAGCTTCCCCATTGACACCATGATTAGTGCTCCCACGCTGTACCGCATGCTGGTGCAAACTGATCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875:ENSGALT00000003038:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTTCCTGCTGTTAGGTACTGGT
R:
CTGGAGAGATCAGTTTGCACCA
Band lengths:
254-2208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]