Special

GgaINT0015372 @ galGal3

Intron Retention

Description
NA
Coordinates
chr14:15223024-15223302:-
Coord C1 exon
chr14:15223222-15223302
Coord A exon
chr14:15223126-15223221
Coord C2 exon
chr14:15223024-15223125
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTAT
5' ss Score
4.29
3' ss Seq
CATGTTGTTTTTCATTCTAGGTT
3' ss Score
11.55
Exon sequences
Seq C1 exon
GGAATAATCTGCTCTATTTCTAGAGGAATGAAGATCAAGCCTGGATCAATGGGAAAGGCCGCTCCCCCATTTGATGTTCAG
Seq A exon
GTTTATTGACTGCTTTTTAGACTTTTCCATAGGTAGGGGACGGGTGTTCTTATTTTATTTTGCTTTTACTGAAGTACATGTTGTTTTTCATTCTAG
Seq C2 exon
GTTGTAGACAAAAATGCTAATATTCTGCCTCCTGGACAACAAGGGGAAATTGCTATCAGAAGCAAACCTGTAAGACCACTTGGTTTATTCACTGAATATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875:ENSGALT00000003038:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):

C1:
PF0050123=AMP-binding=FE(6.2=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.9=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTATTTCTAGAGGAATGAAGA
R:
ATTCAGTGAATAAACCAAGTGGTCT
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]