Special

MmuINT0010282 @ mm9

Intron Retention

Gene
Description
acyl-CoA synthetase medium-chain family member 4 [Source:MGI Symbol;Acc:MGI:2681844]
Coordinates
chr7:126853856-126854202:+
Coord C1 exon
chr7:126853856-126853936
Coord A exon
chr7:126853937-126854100
Coord C2 exon
chr7:126854101-126854202
Length
164 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TATTATTTCTTTTATTCCAGATT
3' ss Score
8.96
Exon sequences
Seq C1 exon
GGAATAATTTGCGCCAATCGCAAAGGAGAAGCAATTAAACCAGGTTCCATGGGAAAAGGAGTAGTGCCGTACGATGTGCAG
Seq A exon
GTGGGTTGAGAAAACATCCGATTGGTTCAAGAAAGAAGACTGCTTTCATTTTCTCCCTGGTCATGACCTGTTTTATATATATATAAAGATATATATATATATATATATATATATAAAGCTATACATATATATATGAAAGACATATATTATTTCTTTTATTCCAG
Seq C2 exon
ATTATAGATGAAAATGGAAATATCCTACCATCCGGCAAGGAAGGGGAAATTGCCCTTAGGCTGAAGTCCGATCGGCCCTTCTGTTTCTTCTCTGAATATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047026-Acsm4:NM_178414:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

No protein impact description available

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAATCGCAAAGGAGAAGC
R:
CATATTCAGAGAAGAAACAGAAGGGC
Band lengths:
170-334
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]