GgaINT0015373 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15221949-15223125:-
Coord C1 exon
chr14:15223024-15223125
Coord A exon
chr14:15222077-15223023
Coord C2 exon
chr14:15221949-15222076
Length
947 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
TGTTTGTAATTCACTTCAAGGAT
3' ss Score
5.76
Exon sequences
Seq C1 exon
GTTGTAGACAAAAATGCTAATATTCTGCCTCCTGGACAACAAGGGGAAATTGCTATCAGAAGCAAACCTGTAAGACCACTTGGTTTATTCACTGAATATGTA
Seq A exon
GTAAGTATTTTATTCCTCACCAACAGCGATCTCCCCAGAATATCTCAAATTCCCCAGAGATTAAAAAGGCCCTGTGTTTTTCACCAGTTTTCAGGCTTGCGGGCCCATTTTTTGAGTCCTGAACTGTAGAAGCAATATATTTTGGTAGAGAGAATCTGAGAATGAACTCCTTAGATACCCTGTGCAGACTGAGACCTTATGGGAAGCTATTCTTCCCCTTAAGGTTGGATATTAGAAAAAATTCCTTTTCAGAAAGAGTGGTAATGCATTGGAACAGGTTTCCTAGGAAGGTGTTGGAGTCACTGTCCCTGGAGATGTACAAGAATAGTGGAGATGTGGCACTTGGGGACACGGCAAGTGGACATGGTGGGATGGGTCGAGGCTGGTGATCTTGGAGATCTTTTCCAACATCAATGATCTATGATTCTAAGATGTGCTTAAGAATAGAGTGGAAAAAATTGATCCAAGCTTCATTTCATCCCATTATTTGATTCAGAATTTTTGTTCAAGAACCTTAAAACATAGATCTGAAAAAGCGGCCTAAAACATTTCCTTACCATCCTTATCACAGACAGTGAGCTCACTGGGAAGTACCATATGTGGATCATATGCTGTCTGAAAAGCTAGTTAAATAATATTTTTTATTTAAGGATTGACTAAAAGATCAAGAAAAGTAGAGAAAACCTGAGCAATTCACTTGCTTGGATTGGTGAATGTTAGAGAGGTAAAGAAAAGAATTTATCAAAGATTAGGTGAATTTCTTTTCAAGAGTCAGAATGGATTTTTTAAACCTACTTTATTGTATTTTATACCAATATCAGTATAATTCTTGAAGAGTGTTGACTGAAAAAATAAATTTCAAATAATTTAACATTATGTGTGTTATAGTATAATGTATAGCTGATGCATTCTCAAAATGTAAGTTACTGTTTGTAATTCACTTCAAG
Seq C2 exon
GATAACCCTAAGAAAACTACAGAAAGCGAGCGTGGGGATTTTTACATCACAGGGGACAGAGCGACTATGGATGAAGATGGATATTTTTGGTTTATTGGAAGAGACGACGATATCATCATTTCTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875:ENSGALT00000003038:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.186
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.9=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(9.8=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAATGCTAATATTCTGCCTCCT
R:
CCCGAAGAAATGATGATATCGTCGT
Band lengths:
223-1170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]