Special

GgaINT0015373 @ galGal4

Intron Retention

Description
NA
Coordinates
chr14:14467020-14468196:-
Coord C1 exon
chr14:14468095-14468196
Coord A exon
chr14:14467148-14468094
Coord C2 exon
chr14:14467020-14467147
Length
947 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
TGTTTGTAATTCACTTCAAGGAT
3' ss Score
5.76
Exon sequences
Seq C1 exon
GTTGTAGACAAAAATGCTAATATTCTGCCTCCTGGACAACAAGGGGAAATTGCTATCAGAAGCAAACCTGTAAGACCACTTGGTTTATTCACTGAATATGTA
Seq A exon
GTAAGTATTTTATTCCTCACCAACAGCGATCTCCCCAGAATATCTCAAATTCCCCAGAGATTAAAAAGGCCCTGTGTTTTTCACCAGTTTTCAGGCTTGCGGGCCCATTTTTTGAGTCCTGAACTGTAGAAGCAATATATTTTGGTAGAGAGAATCTGAGAATGAACTCCTTAGATACCCTGTGCAGACTGAGACCTTATGGGAAGCTATTCTTCCCCTTAAGGTTGGATATTAGAAAAAATTCCTTTTCAGAAAGAGTGGTAATGCATTGGAACAGGTTTCCTAGGAAGGTGTTGGAGTCACTGTCCCTGGAGATGTACAAGAATAGTGGAGATGTGGCACTTGGGGACACGGCAAGTGGACATGGTGGGATGGGTCGAGGCTGGTGATCTTGGAGATCTTTTCCAACATCAATGATCTATGATTCTAAGATGTGCTTAAGAATAGAGTGGAAAAAATTGATCCAAGCTTCATTTCATCCCATTATTTGATTCAGAATTTTTGTTCAAGAACCTTAAAACATAGATCTGAAAAAGCGGCCTAAAACATTTCCTTACCATCCTTATCACAGACAGTGAGCTCACTGGGAAGTACCATATGTGGATCATATGCTGTCTGAAAAGCTAGTTAAATAATATTTTTTATTTAAGGATTGACTAAAAGATCAAGAAAAGTAGAGAAAACCTGAGCAATTCACTTGCTTGGATTGGTGAATGTTAGAGAGGTAAAGAAAAGAATTTATCAAAGATTAGGTGAATTTCTTTTCAAGAGTCAGAATGGATTTTTTAAACCTACTTTATTGTATTTTATACCAATATCAGTATAATTCTTGAAGAGTGTTGACTGAAAAAATAAATTTCAAATAATTTAACATTATGTGTGTTATAGTATAATGTATAGCTGATGCATTCTCAAAATGTAAGTTACTGTTTGTAATTCACTTCAAG
Seq C2 exon
GATAACCCTAAGAAAACTACAGAAAGCGAGCGTGGGGATTTTTACATCACAGGGGACAGAGCGACTATGGATGAAGATGGATATTTTTGGTTTATTGGAAGAGACGACGATATCATCATTTCTTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875:ENSGALT00000003038:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.029 A=NA C2=0.186
Domain overlap (PFAM):

C1:
PF0050123=AMP-binding=FE(8.0=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(9.9=95.3)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAATGCTAATATTCTGCCTCCT
R:
CCCGAAGAAATGATGATATCGTCGT
Band lengths:
223-1170
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]