GgaINT0015374 @ galGal4
Intron Retention
Description
NA
Coordinates
chr14:14466538-14467147:-
Coord C1 exon
chr14:14467020-14467147
Coord A exon
chr14:14466638-14467019
Coord C2 exon
chr14:14466538-14466637
Length
382 bp
Sequences
Splice sites
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
3' ss Seq
GTTGTTCTTCCCTTATCCAGGTA
3' ss Score
9.61
Exon sequences
Seq C1 exon
GATAACCCTAAGAAAACTACAGAAAGCGAGCGTGGGGATTTTTACATCACAGGGGACAGAGCGACTATGGATGAAGATGGATATTTTTGGTTTATTGGAAGAGACGACGATATCATCATTTCTTCGGG
Seq A exon
GTCAGTTTGTGTGCTTCTCTTCTAAACCTGCCGTTATGCAATGTTACTGTTGTGCTTCTGATACAATGGTCCTGGGGTGAAATGCATTACTTCTCACCTTATGAACACTCGTTTTATTACAAGTTTTTCCTAGACCTGCAGTATCATCTTACTCATGTATCTGTATCAGTTTCCCCTGCAACTCATCTCTTTCAGCACATGAGCACAGCACAACTTTGCCTGTTTTCCACTGACAGAGGAGGGATTTTAATCTAGTTTCAGTTTAAATTGAAATTGAAGGATACCTCTATCATAGCCAAGGAAACATTTTATTTCAATACTGGTTTGGTACTGGTTTTCCAGCTCATAAAATCAAATCCTTTGTTGTTCTTCCCTTATCCAG
Seq C2 exon
GTATCGCATTGGGCCATTTGAGGTAGAGAGTGCCCTGATAGAACACCCAGCAGTAGCAGAAACAGCTGTTGTCAGCAGTCCAGATCCCCTCAGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875:ENSGALT00000003038:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(9.9=95.3)
A:
NA
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTAAGAAAACTACAGAAAGCGA
R:
TCTCCTCTGAGGGGATCTGGA
Band lengths:
223-605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]