GgaINT0015376 @ galGal3
Intron Retention
Description
NA
Coordinates
chr14:15220044-15221037:-
Coord C1 exon
chr14:15220918-15221037
Coord A exon
chr14:15220131-15220917
Coord C2 exon
chr14:15220044-15220130
Length
787 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TCTTCTGTCTTTTTTTGTAGGTG
3' ss Score
12.65
Exon sequences
Seq C1 exon
GTTGTGAAAGCATTTGTGGTCCTGTCTGACGCCTTTTCATCCAGTGATTGTGAGAGCTTAGCCCGCGACTTGCAGGAGCATGTCAAGAAAACCACTGCTCCATATAAATACCCCAGGAAG
Seq A exon
GTAAATGCTTCTGGAGAAACTAAACCAGAACATTCTTCCATAAATCTCAGGAAAATTATTTTTTGGATCTTCACTGTTCACCTGAAAGAAACAGTGATAAGGGTTCAGCTAGAGCACTGGCTAAAGAAGATCACTCATAATAGTTTATGTTATTTATCATTTGAGTAAAGTGTTTGCTTAAACCTCAGAAATACTTCTAGGCTTTGTCTGATATCCTAGTTAGCTCTCTAAGTCAACATCACAACTACAGATCTCCATTTTTGTATTCCATATATAACCAAGCACTTTCCAGTAACTTTAGGGGTAGGACATGACTGAATCCCAGTATTTGTCCACTGGTCCTCACAGTTACCAGCTAAGAGGAGGATAAGCCTAATGTTTCTCAGAAATATCAACACTACAGGAAAAATGTTGCCAGCAATGGTTTAGTTTACATATGTAGAACTTGTAGGATCTAAGGACCATTACTTTATGCCAATATCATCCCTTTTCTCTTCATTTTGTCATTATTCACCTCTGTTCTCAGATAGCATTAGTCTTCGTCCTTTAGTTACAACGCCCAGCTTGGTTACATGGAAGGCAGCTTCCCCTGTTGTTTGACCATCTAGGAAGGCAAAAAAATCTTCAGAAGATGAACACTGTGCTGTCTTGATTTGGCTTGGACTTGATCCTCTAGGCAAGATGTGTTTACTGATGGGAGGTCTCCTTGTTTTCCATGTACATTGAGAGTCTTGGAAAAGCTGCTCTGCAGAGATCGTGCTACATCATCTTCTGTCTTTTTTTGTAG
Seq C2 exon
GTGGAATTCGTCCAGGAGCTGCCAAAGACAATCACTGGGAAGATAAAGAGGAATGAATTAAGAGCCAAAGAGTGGGGACAGATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875:ENSGALT00000003038:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=FE(48.1=100)
A:
NA
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGAAAGCATTTGTGGTCCT
R:
TACATCTGTCCCCACTCTTTGG
Band lengths:
206-993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]