MmuINT0010274 @ mm9
Intron Retention
Gene
ENSMUSG00000047026 | Acsm4
Description
acyl-CoA synthetase medium-chain family member 4 [Source:MGI Symbol;Acc:MGI:2681844]
Coordinates
chr7:126856356-126858080:+
Coord C1 exon
chr7:126856356-126856475
Coord A exon
chr7:126856476-126857771
Coord C2 exon
chr7:126857772-126858080
Length
1296 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
CTTGTTTTTCCGTCAATCAGGTG
3' ss Score
8.35
Exon sequences
Seq C1 exon
GTGGTGAAGGCATTTATTGTACTAGCTGCACCCTACAAGTGCTCCAACCGTGAGAAGTTAACCGCTGAACTTCAGGATCATGTGAAAAATTCAACAGCACCTTACAAATACCCAAGAAAA
Seq A exon
GTAGGTGCAAGTTACCTCTGAGTTGAATTTTGACTTTACACTTGCTGTGTATCCTAGAAGATACATCTTGAGTTACTCTGAAAGTTTTTGCTTAAAGTGTTTTATATTTAGGATATTACAAGTGATCCTGTGTTGCAGGGGCTGGGTGTATGACTAAAAAAAAGCACTTGCTGTAAAAGTGTGAGGCCTGGAGCTCAGATTCCCAGAACCCTTGTACATGCATGGGTGGGTGTGCTGGCTCAACTGCCTTGGAAGGCAGAAGTAGAAGACCAGAGCAAGACCAGTCATATCTGAGAACTCTGGGTTTGACTAAGAGACCTGCTCTGTTAGGTGGAAGAGTTAACTGAGGATATGTGTGTGTGCCCATATAGGTGTGTTCACACATGCAAAGAAAACGCAGATGGAAAAAAGAAAAAAATAGACTGTAATACTAAGAATATTTTCAGGACTCATAAAGGCCATTTTATATGGAGAAGGGGGGTGGAAGTTAAGAATCACCAAGTTCCTAATTTAGATGTGGCACCTGTTCTTCAGAGTGAAACAGGCTATGCTACCCCTTTAAGCCCAAGATGCTCAAGTAGCCCTATTTAAGCCTCAAAAGCATACACATATGCGCACGCGCACACACACACACACACACACACACACACACCATACACATAGAGGATTCTTCCTGAACCTTTCTACAAAGGCAGAAGGACAGAAGAACAAGCGCTTATAAAGACAAGGATGGTTGCAGTCCCTTCTGGCTCTGGCGTACTCTCAGCTGCACTCCACTGGTTAATTATAAGACCATTTCACCATTTGATTACAAGACCATTTCATCATTTGAGCCAAAATACAATTCATGTTAGTGATCTGATCCAACCATCTTCACACTTCTTCCATTAAAAACCTACATTGGTAACTTTGACTTTCAGAAGAGATGTGAAGACATGTAAAGGATATTTGAGAGAAGGAATCAAAGACAAAAATGTATGGCCAAGTCCGGATTAAGGTGAAACCTCTACTAACTCTATAAGTCATCCCTAAGATTTTCCTCAGACTCTTTAGGTCCCAGATCTTTAAAGACCAACATTTTAAGAGGTCTTTTCTCTGAATCGGGTGTAGTAGAAGGCAGTTGGGTTCTAGGTGTAAACAGAAGAAAACCAAAGGAAGAAGAGATTTACTTTTGGAAAGATAGCAAAGCTGGGAAGCTCCCATTTTAACCCTTAGCGCAGGGTTCCTATGATTGCACTGACTGCTAGGATAAGACACAGGCAATCAAATGCCTCCTCTTGTTTTTCCGTCAATCAG
Seq C2 exon
GTGGAATTTGTTCAAGAACTCCCAAAGACAATCACTGGGAAAATCAAACGCAACGTGTTAAGAGACCAGGAATGGGGAAGAGCATAGCTGGATGAGAACCTTGCTAGAAGTGATGCGGTTGGTTTCAGTACCAGCTTCCTGATAGTTCAACGGCTACTCTTAAAATGCTTGAACATTTTTTTTCCTATTTCACTCTTAAAATGCTTTGTCTTTCCTGTTTCGCTCTTAAAATGCTTTAACACTTGTTTTTTTCCTGCTTGAAAATAGTTCTATCTAGGAAAACAATAAAGAAACAACCAAAATCTAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047026-Acsm4:NM_178414:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131931=AMP-binding_C=FE(48.1=100)
A:
NA
C2:
PF131931=AMP-binding_C=PD(16.0=44.8)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAAGGCATTTATTGTACTAGCT
R:
GCGAAACAGGAAAGACAAAGCA
Band lengths:
342-1638
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: