GgaINT0016683 @ galGal3
Intron Retention
Gene
ENSGALG00000003075 | SLC34A1
Description
NA
Coordinates
chr13:10215738-10216571:+
Coord C1 exon
chr13:10215738-10215887
Coord A exon
chr13:10215888-10216436
Coord C2 exon
chr13:10216437-10216571
Length
549 bp
Sequences
Splice sites
5' ss Seq
TCCANNNNN
5' ss Score
0
3' ss Seq
CATGTCCATGTCTGTGCCCTTGT
3' ss Score
-9.98
Exon sequences
Seq C1 exon
GCGAGCACCTCTTCACGGACACGCCGCTGCCGGACCTGGCCGTGGGGCTGGTTCTGCTGGCCGGGTCCCTCGTCGTGCTCTGCACCTGCCTCATCCTCCTGGTCAAAATCCTCAACTCCCTGCTCAAGGGGCAGGTGGCCAAAGCCATCC
Seq A exon
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCCATAGCTCTCTCCCCAGCACCAGGTAGGAGCTCTGGGCTGATCCCAGCTGACATGTCCATGTCTGTGCCCT
Seq C2 exon
TGTCTTGTGCCATGGCAGACCTCCCACACCCATTCAGCTGGCTCACCGGGTACTTCGCCATGGTGGTGGGCGCTGGGATGACCTTCGTGGTCCAGAGCAGCTCCGTCTTCACCTCAGCCATCACACCACTGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075:ENSGALT00000004859:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(15.0=41.2)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(32.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACCTCTTCACGGACAC
R:
CGATCAGTGGTGTGATGGCTG
Band lengths:
283-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]