BtaINT0135290 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001545 | SLC34A2
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr6:46745199-46747047:+
Coord C1 exon
chr6:46745199-46745366
Coord A exon
chr6:46745367-46746930
Coord C2 exon
chr6:46746931-46747047
Length
1564 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TCTTATCCTCTGTCTTCCAGATT
3' ss Score
10.87
Exon sequences
Seq C1 exon
GCCAGCACATCTTCGTGAATTTCAACCTCTCAGATGCTATTGTTGGCACCATCCTGCTGATCACCTCCCTGCTGATCCTCTGTACCTGCCTGATCCTAATTGTCAAGCTCCTGGGCTCTGTGCTCAGGGGGCAGGTGGCTGCTGTCATCAAGAAGACAATCAACACTG
Seq A exon
GTAAGCTTGCTGCCTCTCATTCTGGACCTTTTAGGGGTGGCATCACTGTGCCCCTCCCCCATAGGGAAGCTCCTGTTGATTCTCTTCTAGCAACAGCTTCTACATGGAGTTTCTGTCTTGGCTCTGAGAAGCTGTGAAAGTTACAATGCCACTTGCCTTCGAAATCCTCCTTAGTGTTTTGAGTGGAGCCTGGGGAGCACTTGTTTGCAAGGTCTTGAGAAAGAGCCAGCTTAAGTTCAAATTGCTATGAGTTAGACCTTCCTTCCTACCAGGTTCCCTGTTTGCCCAGGACTTTACTGAGTCTGTCAGGATCCCTTAGGTAATAAAGGGTTGCAGAAGTCCACTGCGACCCTTATTTCCCTTCAGCTCTTGGGAAGAAAATGTGGTTCTGGATAAATACATCAGCATTTTGAAACAGCCAGGGAGACTCTATTGCTGAGAATGGCATCCTGGCCAATGAAAACACACCCCATGAACTCTGCCTGTGAAATGGGGCTGAGGATGTCTACCTCCCGAGGTTGTCATGAGGGTGAGCTGAGCGACTCTTCTCTGGGTGCTTGCTGGCTATGCGGGGCATGGTCCTGGACTGGTGGTGCCAAGAACAGGGTCTCTGGGGCTTCCAAGCTGCTTCACATACTCAGTGCTCTTTTAAGTGGAAACAAAAGTGGAGGGTATGAAGCACTGGGAGACCAAGACAGGAGGAAAGCTAGAGCCTGAATGCTCAGAGTGCTTTGTTGGTATTTGGGTGGCATCTTAGTGTGGCTCAGAGGGTAAAGTGTCCGCCTGCAATGCGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTGCCTGGAGAATCACACGGACAGAGGAGCCTGGTAGGCTAAAGTCCATGGGGTCACAAAGAGTCGGACACAACTGAGCAATTTCACTTAGTCTAACCACTGTAACAAATTCTCATAGACTGGATGGTTTAAACAACAGCAATTTATTTCACACTGTCTTGGAGACTGGGAGGTCCAAGATCAGGGCGCCAGCACAGTCGGGTTCTGGTGAGGACCCACTTCCTGGTTTATAGATGGCTGCCTTTTCACCAAAACCTCACGTGGACAAGCTCTCCCTTCTATAAGGGCACTAATCCACTCTTGAGGACTCCAACCTCATGACCTAGTCATCTCTCAAAGGCCTCACTTCCTAATACAATTACATTAGGGGTTAGGGTTTCAACACTTGGATTTGGGGTGGGGGAAATGACACAAACATTCCATGCATAACAGATGGGTTCAGCATTCAGAACTCCAATGAATATGTGTTTTTGTCTTGGCAACACATCCTTGCTTCCACCATTTGAATATGCAAGGTGAAAGAATGCTAAAAAATCCAATTTGCAGCTTCAGACTTCTGTGTGGGTGTGCAGAGGAGTTTACACAACCCAAACCTCTGGCCCAGTTGTGCTGCCTGGATCCTAGGGAGATGCCAGCTGGGCCTCCCAATCCATGCCTCTTCCAGAAGGATTGTGATGCATCTCTTATCCTCTGTCTTCCAG
Seq C2 exon
ATTTCCCTTACCCCTTTAGCTGGGTGACTGGCTACCTGGCCATCCTTGTGGGGGCAGGCATGACCTTCATTGTTCAGAGCAGCTCTGTGTTCACGTCTGCTATGACCCCACTGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001545:ENSBTAT00000002023:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(27.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCACATCTTCGTGAATT
R:
TGGGGTCATAGCAGACGTGAA
Band lengths:
278-1842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]