GgaINT0072514 @ galGal3
Intron Retention
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75886294-75887944:-
Coord C1 exon
chr4:75887777-75887944
Coord A exon
chr4:75886411-75887776
Coord C2 exon
chr4:75886294-75886410
Length
1366 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATT
5' ss Score
5.99
3' ss Seq
TCTTCCCCCTGTTTTTCTAGATT
3' ss Score
10.71
Exon sequences
Seq C1 exon
GCCGGCATCTCTTTGCAGAAACAGACCTGCCTGATCTTGCCATCGGTCTCATACTTCTGGCTTTGTCCCTGCTTGTTCTTTGCTCCTGTTTGGTGATGATCGTTAAGCTGTTAAACTCTGTGCTTAAAGGACAAGTAGCAAGTGTTATCAAGAAGACAATCAACACTG
Seq A exon
GTAATTACCTGCTTCCCCTGAAGCTTGTTCTTAGTAATAGCAAGGACACTGGGTACATTTGCTGACATCTCCCGTTCTGTTACTGCAGAACAGTTTCAAGAAAATAATATTAAACCAGAAATGTTGCCTCTAAATATTTCTTCAGTTCAGCACGTTATTTTCTTCCTTAAAAAAATGTATTAGTGAACAGTTCGCTTGTGAACTGCAGATTAAAAGCAACAGAGACTAAAGTCCAGGCTCTGCTCCTGATGTGTAATCATTAGCCGTTAGAAATGTAATCTTCACATCCCCAAAAGATAGTGCTGAAGTGCTGAGATCATGATTACCTACTTGCACACAAGGTCTGCACGTTCCTTTTAAAGTAAGTTTGACAGACGTATGTAGAGATTATTTGATCTATTTTCCTTTAATTGCCACGTTGCATTCTTTAACCTTCTCCTCAGTAAGATAAGCAATCCTGCATATTGGTAGTTTCTGTCTTCCCCTGTGTTATCCAGGTGATTTTTGCTTTTGCTTTCATTGTGTGCAAACTAAGGTGTTTGTTTTGTTTTGTTTTCCACTTGGCTGCCTTTTCTTCATTTTCCATTGAATGGATTGTTCAGGACCTGCACCAGGGAAAAGCAGTCCTGGCATACACCTGATTGTGTGAGAGGGCTCACAGCCATGGGGAAGACAACAAAGTGGTCCCCATTCTGTCTTCTCCTGGGTAAAGATCACTGCCCAAATCAAAACAAACGGGTAGAAAGTGGCCAATTACTGTTCATTTGTGATTTGCTCAGAATCTCTCTGTGTCATCTCAGCTGATGAAGTCCTGACCTCTTGGCTCACTCATAAATCTGCAGACTACAAGGGACGTTGTACTTATTTTCTCTAATTGGTGTGATTAGCTTTTCTTTGCAAGAGTAACAAATGAATTATTAGGAGATGTTCAGCTCGCAGCTAGTTAGGAGCCTTATGACTTTAGCATGGTGGTCTTCAGAGCCTTTTGAAGATCCCATCTACAAAGCGAGTGCCTGGTTGCCAAAGCCAGGAAACCCTAGACAATTAGAAGGTGTTGAGTTGAGCTCAGTGGAAACATGTCTGGCACCTAATTGTATTACAGCATATATATTGCCCTGGGTCAGGACAAAAGTCTACCTAGGCTAACATCCATCTCACAGTGTGTCCAGTGGTGGAAAGCTGGAGAGAGTACAAATGACAGGACAAATTACAGTAGTAGAACTGGCTCTGACCTCCAGTCTTGTTTTTGACAATATGCAAACAATATATACACATTCAAAATGCTTAGTAGGGTTTTCTCTGTTATATGACTTTGCATGGAATGTTTTGTTATTCTAAAGGCATTGTCTTCCCCCTGTTTTTCTAG
Seq C2 exon
ATTTCCCATTTCCTTTTACTTGGCTGGCTGGATACCTGGCTATGCTTGCAGGGGCTGGCATGACTTTCGTTGTTCAAAGTAGTTCTGTCTTCACGTCTGCTATTACACCTCTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372:ENSGALT00000023222:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGCATCTCTTTGCAGAAA
R:
AGAGGTGTAATAGCAGACGTGA
Band lengths:
280-1646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]