DreINT0150669 @ danRer10
Intron Retention
Gene
ENSDARG00000036864 | slc34a2b
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030709-1]
Coordinates
chr23:1087109-1089376:+
Coord C1 exon
chr23:1087109-1087276
Coord A exon
chr23:1087277-1089259
Coord C2 exon
chr23:1089260-1089376
Length
1983 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTCTTTATACCTCTTGTCAGATT
3' ss Score
7.78
Exon sequences
Seq C1 exon
GTACGCACATGTTCGTGTTTGCGGATCTGCCTGATCTGGCGGTGGGTTTGATCCTGCTGGCTCTGTCTCTGCTGGCTCTCTGCACATGCCTGATCCTCATAGTTAAACTGCTGAACTCCATGCTGAAGGGTCAGGTGGCCGTCGTCATCAAAAAAGTGCTCAACACAG
Seq A exon
GTGAGGCGGCCTCAGGGTAATCACCAGACTATACTCTCCACTGTTCTGTTCAGATTGACTACCCTTTGCTTATGTTGGTGGCTGTTTTTGCCCCATTGATAATCGCATGCATGATTATATGCTGTCAAGGCTTTGCAAATAAAATATGTGATTATAATAGAAGTCAAAGGAGCAAAAACAACCACCAACATAATGAAAAGGGAGTCAATTTGCCCAAAGTATATAGTTTTAAAAAAATTCCAAAGCATTTTCCCAAAATATTAGTCGAAATTAGATTTGTCACCAGAAATCCTCCCATTTACTGAAACACAGAGAAAATTGTGGCTTAATTAAGACTCGAGTCGATGAAAACATCTATAAGATAGCATGCATGCAAGTTAACTGATATTAATAACCCACACACACACATTCACTCCCCCAGGTGTGCGTCAACACTGAACCTTTGCACTCTGACACACAAACACACTTTTGTCCCTCCATTTAAAAACACACTTGTGTAATAATTCTTCTTTCCCGGAGCTCGGTCTTATCACTGTCCTGCGTTTGAGATTGTGTTGGAGTGTGTCCTGTCATATGATAGTCAGCGCAGGTGCTGCAGTCCTGCTGTCTGATGAGCTGAACAGGAACAGTAAATGACCTGAGTGTGTCTGAGAGCCGCAGGGTTGTTTATGTGCAGGTGCTGCTGGTTTCAGACATCACTCGGGTACATGCTTACTAAGAACTCCTCCAATCCGCCTACTGTTCCTGCATCGTTGCATTCAAACTCCTAACAAAGCCCTTGCTACAGTCACGATACATTCTAGGAATATTAGTCCAACTTTTTATTTTTTTTAAGGCTTTAAAGTGGACATGAACTGCTTTAATTTTGCAGTGTTCTGTGAAGTCTGCTTATAAAAGTGAACGTATGTCAGAATAAGTTTAGATGCGTTTATACATTTTTTATTGATTATGGCTCATCATGATTTTAAAGTGGTTCAGTTCCGTATTTAAGCAAAATGTTTTCTTCGAGTGTACTTGGCACTATATATATATATATATATATATATATATATATATATATATATATATATAGAGAATTTTAATTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATTATTATTATTATTATTATTATTATTATATTTTTATTTTATTTATTTTTTTATTCTTTCTAAATAGAAATATTCAAGTCTGGCTGAATTATAAGTTTAGCTGGATGAAACAATTTTGTAGTGGAAGTCCATCTAAAATTTAAAACTAACCTAGACCATTGCTGTGGTTTAAAAGTTAGCAGTAAACACTTACCTAGAGCGTTGTTTGCTGTTAAACTCTAGGCTAAAGATAAACGGTAGACAGTGCTCATAGCCAGAGCACCATCTGCCTTGGGCGCCGTCCGCTGTCGAACGCCGGCCTTAAGCGCCGTCCACTGTCTAGCGGCGGCCTAGAGCGTCGACCGGCGGCCTAGAGTGCCGTTCGCTGTCGAACGAAGGCCTAGAGCGCCGAACGAAGGTCAAGAGTGCCGAACGAAGGCCTAGAGCGCCGTCCGCTGTCGAACGCCGGTGCTGTGGCACGCCGTCTGCTGTCTAGCGCCGGCCTAGAGTGCCGTCAGCTGTCGAGCGCTGGCCTAGAGCGCGAGGGAATAATGCATTTTGAAAATGGCAGAATCGATGTCTCTGACTTTATCACAGCTCTACTCATCTAATCTAGAACTCCACATATAAACCCTCACGATTTAGGGTTTATTTTCTGTTTTGAACCCTCATCTGAACACCGATAGGAGTGACAGCTTGTGGACTGTACTGGTTTGATTGGCTTGCAGTTTTACATACTGAAATGTTTTGAGGAATGGGAAGCCCACTAATGTAAACTCTTGCATGTGTGTTTGACCTCCTTAAGCTTGTACATTTGACCAACATCTCTTTATACCTCTTGTCAG
Seq C2 exon
ATTTCCCCTTCCCCTTCGCCTGGGTTACAGGATACCTGGCCATCCTCGTGGGAGCCGGAATGACCTTCATTGTTCAGAGCAGCTCCGTCTTCACCTCCGCCATCACTCCTCTAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036864:ENSDART00000053527:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGCACATGTTCGTGTTTGC
R:
ACTAGAGGAGTGATGGCGGAG
Band lengths:
282-2265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]