RnoINT0137598 @ rn6
Intron Retention
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9749833-9753142:-
Coord C1 exon
chr17:9752975-9753142
Coord A exon
chr17:9749950-9752974
Coord C2 exon
chr17:9749833-9749949
Length
3025 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGGATTTGGTTTCCTTTCAGACT
3' ss Score
7.87
Exon sequences
Seq C1 exon
GCAACCATATCTTCGTGGATACTGGGCTGCCCGACCTGGCCGTGGGGCTCATTCTGCTGGCGGGCTCCCTGGTGGTCCTGTGCACTTGTCTTATCCTCCTCGTCAAGATGCTCAACTCTCTGCTGAAGGGCCAAGTGGCCAATGTCATCCAGAAGGTCATCAACACAG
Seq A exon
GTGAGCTGGGAAAAGGCCGCAGGTCTAGGCAGGGCCCCAGATGAGCTCTTTCAGGTGTTGTTATAAACCCGTCGCTATCGTCTGTGAGCCCAAGTTTCCCCTGGACCAAGAAGAGGTGGGACCAGGTCATCCTGGAGGCTCCTTAGATGTTGACAGCCAGAAAACTGGGGCCATCTCTGACCGTTACATTCTCTGGCAGATGGGCATTCTTCAAGAGCCATTGTTTTGGTTTGGTTTGGTTTGGGTGTTCGAGTCTTGGTTTCTCTGTGTAGCCCAGCTGTCCTGGAACTTGATTTGTAGACCAGGATGGCCTTGAATCTCAGAGAGATCTGCCTGCCTCTGCCTCCTGACTGCTGGGACTAAAGGTGTGCACCACCGTGCTCATCTTCCCTGTTTGTGTTTACTTATTCTGGATTTTTCCAGACAAGGTTTCATGTGGCCCATAATGTCCTAGACCTTACTCTGCACAGCCTAGACTGGCCAAGAACTTTTGATATTCTGCCTTTCACTTCCGAGTTGTGCTGGGATTACAGCTATGCATGGCCTTGTCTGGCTAGAAACTTCTGTTTAGTGGACAAGTGGACATTGAGCCCCTACTGTGTGCCACAAGACACAGGAGCAAGTCAAATAGAGATGCTTGCTGGTTTTAAGACAGTTTCTCTGTGTAGCCCTGGCTATCTTGGAGCTCTGTAGACCAGGCTGGCCTCCAACTCTGTGATTAAAGGTATGTACCGCCACTACCCTTGGCTTTTTTGCAGGCAGTGGTGGGAGGGGTTATCTGACTATATACGCTTAGCTAGCCTGGAACTCGCTATGTAGACCAGGCTAGCCTGGAACTCAGAAACTCTGCCTCCAGAGTCCTGGAATTAAAACCATGCACCCATGAGTTCTGCCAAGATAAACATAGAGCAGGATCATGAATCTGCTCTTGTTGTACAAGCCTTAGAGCCTGCGTTGGATTTCCATAACCCACATAAAAAGCCATGTACTGGGGTACATGCCTATACTACCAGTGGTATGGGGCAGAGACAGGAGGATCCCTGGCCCGTCAGTTGAGCCACTTGGTGAGATCTAGGTTCGGTGAGAGACCTTGTCTCAAAAAATAAGACAGACAGGGGGTGGTGGCACACACCTTTGATCCCAGCACCCAGGGGGCAGAGGCAGGTGGATCTTTATGAGAGTAAGGCCAGCCTGATCTACTGAGTTCCAGGACAGCCAGGGCTACACATGGAAAACCCTATGTTAACAACCCCCCCAAAAAAAAAACCCCAGAAGACAGAGAGAGATAAAGACAAGATGGACCTCTGGCTTCCACACACAGGGAGGAAAGCCAGATGTGATAACTCACAGCTGTAACCTCTGCACTTGGAAGGCTGCTGAGGCAGGAGGATTGAGGAGAATTATGAGGCCAGCCTGGACTATAAAGTGGAGACAGTGGCAATCACAGCAGGTTTGGGACAGAGTGGCTGTCAGTAACTTGGGAGGGATGGGCTAAGGCTAAGGGCCAACATAGACGGAGCAGATTTAGGGGCCTCTAAACTTTACCAGGGTCCATGCTTTACTGAGGGCGATGGTGTACTCGCAGGATTTGGGGCAGGGGGTGACATTAACTGATTTTCTTTTCTTTTTTTTTAAGATTTATTTATATATTTATTATATATGAGTACACTGTTGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGGTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCACATTAACTGATTCTTATTTTAATCTACATTTTGGGCTTTTGAGTTACTGCGCTGACACTGGGGAATCACACGTGACAAATGTGGGAGTAAGGAATGCCCAGAAGGAAGGTCAGGATGGGGTTTCCAGTAAGGAAACCATATCCTGGGGTGGATACGATTGACAGTCTGTCTCTGTGGGACCCTGTGGGCAGATTCAGTCAGCCATGAATCAAAAGCATTTCAGAAAAATAATTGCATGCCTTGAAGCAGAATTTTGTAATTTTTCTTTTTTAAAATTTATTTATCTTATGTATGTGAGTGCACTGTTGCTGTCCTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGAAGGTTGTGAACCACCATGTGGTTGCTGGGATTTGAACTCAGGACTTCTGGAAGAGTAGACAGTGCTCTTAACCACCGAGTCATCTCTCCAGCCCTGTAATTTTTCTTCTTAAGCATTACAGAATAACAAATATTTACACTGTTGCAATGTTTTTGTTTGCTTGTTTAGTTTTAGGGGCTTTTTTGTTTTTGTTTTTGTTTTGAGACAGGATCTCTCAATCAGCTATGGCTAGCGTGGAATTCACTAGGTAGACCAAGCTAGCTTCAAACTCATAGAAATCCACCTGCCTCTGCCTTTTGAGTGCTGGAATTAAAGATGTGCACCATCACACACACACACACACACACACACACACACACACACACACACATCTCACTTTATTCTGTGTGTGTTTGGGTGTGCACACATGGTCCTCTCCTTCCACCGTGTGGATCCCAAGGGTTGCTCAGGTCATCAAGCTTAGCGGTAGGAACTTGCTCCGCACAGGCGCCTCACCAGTCCCAGCTCTTTACTGAATTAGGTCAGAGAAACCATCCAGACGTGACTTAAAGCGCGTGGGCGTATCCTTCGCTGTGCTGTAGACGCTTACCTTTTGGTGCCCATGACATCCTTCACCCAATCCCCCATGGATCTCGATGCTGAACAGAAAGCACAGCTAGGGCAGGGCACAGGAGACTGTAACAACCCCAGTAAGAAAGAGCTGTGACCACGAGAACAAGCAGGGCAAATAAAAGCTGCTGTACTCGAGCAGAGGACCAGCTAGAACCTACCACCTCAGTACCTTCTCCCTAAAGCGAGTGCCTGCTCTCCCATGCGCTCCCGCTGACCAGCTTACTGTGGATTTGGTTTCCTTTCAG
Seq C2 exon
ACTTCCCAGCCCCCTTCACTTGGGTCACAGGCTACTTTGCCATGGTGGTGGGCGCCAGCATGACGTTTGTTGTCCAGAGCAGTTCCGTGTTCACCTCAGCCATCACTCCGCTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262:ENSRNOT00000033749:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]