BtaINT0135277 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40249521-40250996:+
Coord C1 exon
chr7:40249521-40249688
Coord A exon
chr7:40249689-40250879
Coord C2 exon
chr7:40250880-40250996
Length
1191 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
AACTGACAGTTTCCTCGCAGACT
3' ss Score
3.69
Exon sequences
Seq C1 exon
GCAACCACATCTTTGTGGACACGGGGCTGCCTGACCTAGCTGTGGGGCTCATCCTGCTGGCTGGCTCCCTGGCACTCCTGTGCACCTGTCTCATCCTCCTTGTCAAGATGCTCAACTCTCTGCTCAAGGGCCAGGTGGCCAAGGTCATTCAGAAGGTTATCAACACTG
Seq A exon
GTGAGCCCCAAGTGGTGGGTGGGCAGGCCCCAGGACGGGCCTTCTGGATCTTGTTAATACTTCTACTGCCTTACTGTGTGATCTGGGTAAAGCCCTACCATCTTTGAGCCTCAGTTTCCCCATGTGAACAAAGAACAGGTTGGACTGGGTGATATATGAGGTCCCTGAGATGCTGACAAGCTGGGAATCTGTGGCTGCTTCCGTTCCAGCAGGTGGCTCCAAAGGGATTCCCAGAGGCCATTGTTTGATTCAATTAACAGTCATTAAGTTCCCTCTGTGTACCAAGCACAGAGTGGTGTGAGGGATACAGAGGTGAGCCTCACAGAGATGGCTCTTGCCCTCAGGGGGCTCATAGCACATATGGGAAGACAGTAAAAAAAAATGATCGAGGGGGGATGAATTTAGATAAAAGAGAACAGTAACTGCCAAACAGAAAGCAAAAACAGCAAATAGAGTATGGAAGAGTTGCTTTTGATAGGTGGTCAGTGGCTTCTGTGCAGAGGTGACATTTGAGCAGGGACCTACATGTGAAGCAGTCAGACGTGGCCGAAGAGCTTTTTGAGTGGAGGGAACAGTACATGCAGAGGCTCTGAGGCAGGCTTGTGGCACAGAAAGGTGGCCAGCCCTGTGGTGGGAGCTCGGTGAGTGAGGTGGACAAAGCCAGGGAGAGGTCAGCAAGGTAACAGGGCCCTGCAGGTTGCACTTAGAGCCTGGACTTTATCCAGGGCGATGGGGGCACTTGGGGGGTTGGGGCAGTGACACCATTTAAGCCTCACGTTGAGCTTTGGGGACCCCACCTGGCATGGGCAGAGGCCATATGACAAATGCTGGAATAAGGGGCATTTGTGGATCTGTGAGAGTTCAGAGGAAGGAGAAGCAAAGTCTGCCTGGGGACTGGGGTCAGGGAGGGCTCTCCAGCGGCAGAGATATCCACGCTGAGTCCTGAGCATGAATATTTAGGAGTGAGGAAGCTATCCCAGGCAGAAGGAACAAGGGAGCAAAAGTATGATGGAAGCAGGCTAAGAAGGGTCTTTAAATCCAAGATCAAGGAGGACCAGGAGAAGCTGCCGCTGTTGAGTAGGAGACTGACAAGGTGCCACTTGGAAGCTGGCATTGGAGACCTCCTCCCCAAGAAACGTCCCTGCCCCTCTCAATCCCCTCCCACTGATCCAACTGACAGTTTCCTCGCAG
Seq C2 exon
ACTTTCCCACCCCTTTCACCTGGGCCACAGGCTACTTTGCCATGGTGGTAGGGGCCAGCATGACCTTTGTCGTCCAGAGCAGTTCTGTGTTCACCTCAGCCATCACCCCACTCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351:ENSBTAT00000027121:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(27.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTTTGTGGACACGGGG
R:
GATGAGTGGGGTGATGGCTGA
Band lengths:
278-1469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]