GgaINT1025589 @ galGal4
Intron Retention
Gene
ENSGALG00000003075 | SLC34A1
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr13:9450992-9451627:+
Coord C1 exon
chr13:9450992-9451159
Coord A exon
chr13:9451160-9451510
Coord C2 exon
chr13:9451511-9451627
Length
351 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTTGTCTTGTGCCATGGCAGACC
3' ss Score
7.07
Exon sequences
Seq C1 exon
GCGAGCACCTCTTCACGGACACGCCGCTGCCGGACCTGGCCGTGGGGCTGGTTCTGCTGGCCGGGTCCCTCGTCGTGCTCTGCACCTGCCTCATCCTCCTGGTCAAAATCCTCAACTCCCTGCTCAAGGGGCAGGTGGCCAAAGCCATCCAGAAGGTCATCAACACTG
Seq A exon
GTGAGTGGGACAGAGACTGCTGCGGGATGGGATCCTGACAGCCCCAGCTCTCTCTGCTTGACCCCTGTCACCCCCCATCCCCCAAACCTACCTCTAACCCCCAGCCCTGCATGAACTCCCGGCCCCACTCCTACCTGCTCCCTGCTCTATTTATGCCCATCACATCCTCCTGGTGTCCACACCCCTCTTCCCATCCATCCATCCATCCTGCCCAGCAGACTCCTGCAGCCCCAAGCTTGGCCCTATACCCAGAACCCCATCCCATAGCTCTCTCCCCAGCACCAGGTAGGAGCTCTGGGCTGATCCCAGCTGACATGTCCATGTCTGTGCCCTTGTCTTGTGCCATGGCAG
Seq C2 exon
ACCTCCCACACCCATTCAGCTGGCTCACCGGGTACTTCGCCATGGTGGTGGGCGCTGGGATGACCTTCGTGGTCCAGAGCAGCTCCGTCTTCACCTCAGCCATCACACCACTGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075:ENSGALT00000004859:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACCTCTTCACGGACAC
R:
CGATCAGTGGTGTGATGGCTG
Band lengths:
283-634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]