GgaINT0017807 @ galGal3
Intron Retention
Gene
ENSGALG00000006057 | CLK4
Description
NA
Coordinates
chr13:14312840-14313208:+
Coord C1 exon
chr13:14312840-14312922
Coord A exon
chr13:14312923-14313128
Coord C2 exon
chr13:14313129-14313208
Length
206 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCTTTTTTTTTTTAACACAGACA
3' ss Score
7.29
Exon sequences
Seq C1 exon
CACTGGGATGGTCACAACCCTGTGATGTTTGGAGTATTGGCTGTATTCTAATTGAGTATTACCTGGGATTTACTGTGTTTCAG
Seq A exon
GTATGTACATGAAGTTAAGTGGAACGTTTTTTTGTTACAGATTCCTGACTTTGATATTGTAATGCCATGTACTCAACAGTTAGTTTAAAAGGCATAACCTTACAAGATTTGAGTGTTACAGAGATAAGATCATGCAAAACAATCGGAATCTGAAGATGCTGCAGTGATACTTTGGCAAACATTGCTTCTTTTTTTTTTTAACACAG
Seq C2 exon
ACACATGACAGTAAAGAACACTTGGCAATGATGGAGAGAATACTGGGGCCTCTGCCAGCTCATATGATCAAGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006057:ENSGALT00000009766:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGGATGGTCACAACC
R:
TCTTGATCATATGAGCTGGCAGA
Band lengths:
156-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]