RnoINT0037366 @ rn6
Intron Retention
Gene
ENSRNOG00000025768 | Clk1
Description
CDC-like kinase 1 [Source:RGD Symbol;Acc:1311469]
Coordinates
chr9:65297704-65298195:-
Coord C1 exon
chr9:65298113-65298195
Coord A exon
chr9:65297784-65298112
Coord C2 exon
chr9:65297704-65297783
Length
329 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
AATAAGTGTTTTTATTTCAGACT
3' ss Score
5.81
Exon sequences
Seq C1 exon
CCCTAGGGTGGTCACAACCATGTGATGTCTGGAGTATAGGATGTATTCTTATCGAGTATTATCTTGGATTTACAGTTTTTCCG
Seq A exon
GTAAGTGACAATGAATGATGTGCTATAGTGACTTTGCATTAAAAAGTATGTATTTGTGTAAACTACTCTTAAAAAATGTATTTACACAACACAAGAATTAAGATTGTATACTTTGTCTTGGCAGTTTTACCATTATCATAAGCAGTTGTCTCCAACCATTTAGGGAAGAACAGTGGCAAGTTTGAGGCTTGTAATACTTTGTTGTCCTGCAGCTTGAGCCATATGTCATTTTGATGATTATCTTTCTTGTGACTTCTAAACAGCTAGAACTAGAGAACTAATTGTTGAATGGGGCGTGATGTATAAGTTAATAAGTGTTTTTATTTCAG
Seq C2 exon
ACTCATGATAGCAGGGAACATTTAGCAATGATGGAAAGGATTCTTGGACCACTGCCAAAGCACATGATTGAGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025768:ENSRNOT00000030934:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]