GgaINT1009606 @ galGal4
Intron Retention
Gene
ENSGALG00000028438 | CLK1
Description
CDC-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr7:10798438-10799012:-
Coord C1 exon
chr7:10798930-10799012
Coord A exon
chr7:10798518-10798929
Coord C2 exon
chr7:10798438-10798517
Length
412 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
AAATGTTCATTTTCTTCCAGACT
3' ss Score
6.78
Exon sequences
Seq C1 exon
CACTGGGATGGGCGCAGCCATGTGATGTTTGGAGCATTGGATGTATTCTCATAGAATACTACCTCGGGTTCACGGTATTTCCG
Seq A exon
GTAGGTAACAGAGCCTCAGAGATGCAGTGTTTGGTGCACTGCAACTTGGTAAAAGCCTGGAGGCAGGTGGGGTTGCAAAACACTGCTGCTGTACTCCTCTGCCTCGCCACACTGAAGGGATAACAGAGGCGGCTTCATCTCTCACTGGCAGCAGATATTACTCACGTTTGTGAATGTTTTGTTGTTTTGATAGCAGTACTAAAAGGTAGAATTTATGGCCAAAGAGAAGGCGGGGCAGGATTGGGAGGGGAAAAAAAAATTAGTGTAAGTTACTTATGGAAGGAGATGACTACAGGCTCTTTCTTCATGTGGGACTGATTACTGTTTTGCAGTGTGCAATGCAGAAATGAGGTTAACGTGTGCGTCGTGGTAACTTACTTTAATGATGAGAGAAATGTTCATTTTCTTCCAG
Seq C2 exon
ACTCACGACAGCAAAGAGCACCTGGCAATGATGGAACGAATACTGGGGCCTCTGCCTAATCACATGATACAGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028438:ENSGALT00000044904:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]