GgaINT0018367 @ galGal3
Intron Retention
Gene
ENSGALG00000001045 | SLC4A9
Description
NA
Coordinates
chr13:1437204-1440273:+
Coord C1 exon
chr13:1437204-1437276
Coord A exon
chr13:1437277-1440204
Coord C2 exon
chr13:1440205-1440273
Length
2928 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CTCACCCTGGTGTTTTGCAGTAT
3' ss Score
7.75
Exon sequences
Seq C1 exon
GGAGCAGAGGCTGACCGGCCTGGTGGTCTTCATCCTGACTGGAGTCTCTGTCTTCCTGGCACCCATTCTCAAG
Seq A exon
GTACGGAAATTGGCTCCTGGTGTTGGACTCAGGGTGTCTTTGCCTCCTTTCTGAAGTTGGCAGTGTGCACTGCAACCTAAGGGTGGTTCCCAACCCTGTTGCTCCTCCAGCTTCAGCACACGGAGACCCACCCAACAAGGAGTACTGCACTGTGTGGGAAGGGACCTGGCAAAGGCCAGAAGGTTTGGCCCAATTGCTGCAAGGTGGCCCCAGTAGCCAGCTCACGGTTCCCCCCAAGGAGCCAGTCCTGTCCCCTGCCACCTCCTGTCCCATCACCAGACCAGTGCCAGCACTCACCTGGCACCACAGTGAGAGTGGCAGAGGTCCTGGTTGTGCTTCCTGCTATATTTGGGTCACTTCCAAGTTGGGTTCCTTCTCCTCTAGCATCATCTCTGTTCCCAGTTGTGAGGATGGCAGAGATAATAGAGATGAAAACTTCCTGCTCCTCCCTTTACAGTGGGTGGGGAGATGCAGAGTGGAGACTGCCTGTGGGACTTCTGCTTGGAGCTTTGCTAATGGGGCTGTGCAAATATTATGTGGTAGCCCCAGGACTTGAAGCTTGGGCAGGTGATGCATCTCAAGTGGCTGTCTTCATGCCAGAGAAGCTGGCCAAATCCTAGGCATTTCCCACAAACCCAGTGGAAGTTGATGGGGTGCAGAAGGTGACCCCCCTTGCCTGACCAGGCCTGGGAGAAAAATCAGAACATACTGAGCAACATGATGGCAGGAGCCTGGCTGCATACTGGGGAAATGTGCTTATGAGAGAGGAGGTAGAACAGAGAGCAGCCCAGAGGTGGCAGGATCTGGATGCAAGGGCAATCTGGCTGTGACATCTGTCACCCCATTGATCACCAGTGTTGATTCAGCTGATCTCACTGCCTAGGCAGAAGATCGGCTGAACTGTTGACATTGTCTACCTAGACTGCAAGAAAGCTTCAAGAAAACTTCAACCCTGTCTCCCACAGTACTCTCCTGTAAGCTGGCAGCCCATGGCTTGGACAGATACACTCTTGTCTGGGTAAAGAACTGGCTGGATGGCCAGGCCCAGAAAGTGATGGTGAATGGAGTTCCATCCAGCTGGCAACCAGTCTCACTGGTGTTCTCCAGGGGTTGGTACTGGAGCCTGTCCTGTTCAGTATCCTTACTGATGACCTGGATGAGGGCATGGAGTGCACCTTCAGTAAGTTTGCAGATGACACCAAGTTGGCAGGAAGTGTCATTCTGTCTGGGAGTAAGAAGGCCCTATAGAGGGACCTGGTACAGGCTGATCACTGGGACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGCAACAAAGCTGGTGAGGGGTCTGGAGCTTTATGAGGTCTTATGAGACCTCCTCACAGGTCTTATGAGGAGAGGGCTTGTTCAGCCTGGAGAAGAGGAGGCTCAGGGATGACCTTATTGCTCTCTACAGCTACCTGAAGGGAGGTTGTGGTGAGGTGGGGATTGGACTCTTCTCCCATGTAACTAGCAATAGGGTGAGAGGGAATGGCCTCAAATTGTGCCAGGGGAGGTTCAGGTTGGATGTTAGGAAATATTTCTCCAAGAGAGTGGTCAGTCACTGGAATGAGCTGTGCGGGGAGGGGGAGGGGTCACCATCTTGAGGTGTTCAAGAAGTGTTTAGATGTTGTACTGAGGGACATGGTTTAGTGGGAAATATTGGTGATAGGTGGATGGTTGGACTGGATGATCTTGGTGATCTTTTCCAACCTTGGTGATGCTGCGATTCTGTGACTCTCCATCTGGCCTGCAGCTCCACACAGTGCCAGCCAGGGGACAGCTTGGTGTGCTGTTTCACAGAGCTACCTTCTGTCTGCAGCTAGGCCGCGGCCCTTTGGTCACCCATCCCAGGGCAAAGCCTGCATTTGCTTTGTCAGACACCCCACTATTTATAATTCCAATGCTGTAAGACACATTTCCAAGTGCCTTGGTGCCTTATCTCCAGTGTGGGTTACTCCCGGCATGTGCTAGAAAGTGGGGCAAGCTTGTATCCCCTCTCTGAAGGTGGTGATATCCTTGCATCAGTTCCCATCATAGACAGGAACACCTCCAGTTGTAATGCCATTGGAGCCAAAAGATAAGCAAAAATACATGAAATGAAATTGTGCTGTTCAAAGTGAAGAAAACAAACGCTGCAGCTGTATACACAGACTGGTCTTACAGGAGACATAGCCTAGAGAGTGCTGAAGCCTCACCCTGGTGTTTTGCAG
Seq C2 exon
TATATCCCGATGCCAGTGCTGTATGGGGTCTTTCTGCATATGGGAGTGGCAGCTCTGAACAGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045:ENSGALT00000001559:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.6=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]