MmuINT0147283 @ mm9
Intron Retention
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36696501-36699032:+
Coord C1 exon
chr18:36696501-36696573
Coord A exon
chr18:36696574-36698963
Coord C2 exon
chr18:36698964-36699032
Length
2390 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
TCTCTCCTTCTTCCTACTAGTTC
3' ss Score
8.64
Exon sequences
Seq C1 exon
GGAACAGAGGCTGACGGGCTTGGTGGTGTTCGTCCTTACAGGTGTCTCCATCTTCCTGGCACCTGTGCTCAAG
Seq A exon
GTACATGCTTGGCCAGGATCAGGGCCAGTGCAGCAGTTTCCATAGAACTGATCCTGGCTGACCACTTACAGTGTGCCAGGAACTGTGTTTTCTTCTCACATGATTACATTACTCTTCGTGTTCATTAACCCTGAGAGACACCCATACTCTACAAATGAGGAACCTGGAGGTTAAAGAGGTAAAGTAATTTGTAAGTGCCCACCATGAGAGCCATTTCTCAGATTAAAAAAACAAGACAAAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAACCCGGACTTCCAGAGCATGGTGGTTTATGCCTGTAATCCAAGAGGCTGAGGCAGGAGGCTTGTTTCAACTTTGAGACCTGCTTGTGTACACAATAAGTTGCAGGCCAGCTTAGGCTACAGTGTGAGACCCCCCACATCAAAAGAAACCAAAAGCCAGGGGAGTCTGAGATGTCTCAGTAATTAAAGGGTTTTGCTGACAAGCCTGAAGCTTGATGTGGGGCCTGGGTCTGTGTGATGGTGGGAAAGAACTGATTCCAACAAGTTATCCTCTGACCTCAATGCTACACACACACACACACACACACACACACACACACACACACACACACACACACACACTGTAGTACCAATAACAACGAAAGTGTGGTGGTTGCATACTTGCAATTCAAACACTTGGGAGTTTAAGTTCAAGGCTAGCCTCAGTTAGATAGTAGATTTGAGCCAATCTTGATTTACATGAAACCTTATCTAAAAGTAGAAAAATTTTTTTAAAAAATGTACCTAACTTCTTAGTAGGATATGGGGATGCCATCATCCCCTGGGGTTCTTGCACTACCCTTGCCCCAGCCCCCAAACAAGCTGGAGACGAGTGTATATCCATATCCCAGAGAAACTTTGAAGCAAAAACCCTTTATTCTTTCTCAAGGCTTGTGAAACCTCTGCTGGGTACCCCACTGTGCTTGGGACCTAAGAGAGAGGAAGAGGAGTACGGAATAGGGATATGAGACTAAACTTCATCAGAAACTTCACACACACACACACACACCCCTACATAACTATAGAAGAAAGCAATAGAAAAGATCAACAAGTCAAGAGAGCAAAGCAGTCACTGAGGGTGTAGAAATGTCAGACAAGAGTCACCAGCAGGAGGCAGGAGACAGGAGGTTAGGCAGGGCCAAGGTCACGGAGGCTGTGTAAGAGTATTGCAGGAGGAGAGCCAGCCAGACAGGATTGACCACTTGCTAAGTAGGTTGACTCTCATAAATGCTATACCAACTACTGTCCCAGAAACTGGAGATACAGTGGTGATAGCATATGTATGTCTCTGCCCTCCTGGGAGAGAGGACAGATTTTGAAAAGTTAGAGCAATAGGGTAACTTTAGCTGATAGTATCTATGAGGAAATGAAAACAAACAAGGCAATGAAGAGAGCTGGGGATGGCTGGGTGAGATGGTTCAGTGGGCAAAAGCACTTGCCATGCAGGACTGATGACCAGCCTGAGTGCAGTCCCTAGAGCCTTCGGTGGAAGGAAAAGACCCACTCCCACAAGCTGACCTTTGACCTCCACACACAAGCTGTGGCTCACATAGAATAACAGTAGTAGATAAATATTTAAAAATTTTGCAAACAGTGCCAGGGCCACTTCAGATTAAGCAGAGAAGACCTTTAGAGTATTTGATTCATTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGGACAGGATCTCACTTTGTAGCCCTGGCTAGCCTGGACCTTGCTACATAGCCCAGGCTAGCCTTGAATGTATTGCTATCTTCCTGACTCTGCCTCCCAAGGGCTGGAATCACAGCTGTGTGCCATCATGCCCAGGCGAGAGGAACATTTTAGGATGAAAAAACAGTAAAGCAAAGGGCTTTGAAAGGATAAAAACAAAACAAAACAACAACAACAACAACAAATGCCAGCATGTGAATGGAGGGAGGACAGTATATGGGAGCACGTAGAGCAGACAATGTGATGGCTCAGACCAGCCATGGTAGCATCCAGGTGGCTAGAGCAGGGGGATGTCGTGTTGTAGGCCAGCACTTAATACTGTGATGGAAGACAAAAACTGGAGCGCTAGGGGCAAGTTACTTTGTCTCTCAATGTTCTCATCTGTAAAATGCAGACAATAATAGTAATTTCACCTCATGTGATTGACATGGAAAGACTTGATGAAGTCAGGCATGCAGAATGTGAAAAGAGAAGAAAGGCCTGGTGGGCTCCAGTCTGCAGGCCTAAGGTGGGGCGTCTGGGAGGCTGGAAAGTAAGCTCCTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTTCCTACTAG
Seq C2 exon
TTCATCCCGATGCCCGTGCTCTACGGCATCTTCCTGTACATGGGGGTAGCCGCGCTCAGCAGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485-Slc4a9:NM_172830:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(0.1=0.0),PF0095516=HCO3_cotransp=PU(28.0=92.0)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(26.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: