GgaINT0019469 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2888055-2888876:+
Coord C1 exon
chr12:2888055-2888234
Coord A exon
chr12:2888235-2888735
Coord C2 exon
chr12:2888736-2888876
Length
501 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTTTTTTCCTTGTTTTTAAGACC
3' ss Score
8.36
Exon sequences
Seq C1 exon
CTACAGTTCCAGGAGGATCTGCAGATCACACACATGTATTCTTCTGAAGGAGAAGAGGTGAAGCTGTCTGCTGCCATTTATCCCACTGACGAGGTGGAGGACTGGCTGCTGGAAGTTGAGAAATCCATGAAGGCCAGCGTACGGGACAACATAGAAAGATCAGTTGGTGTCTACCCAGAG
Seq A exon
GTGAGAGTTCTATCACAGACTTGCAGTTCTCTGGTGACTTGGTCCTAGGCTTGCCATAGAAGTCATCAGTTATGGGGATAATGAATCTGTGATATTCTACTAGTTGTAAAATACAACCTGCAGAAGGCACAGTTCAGCAAAAATAGTTGATAGTCCAGAGAATGCAAACTCTGTGATTTGACAACTGCAGAATACTTCCCTGTATCACAGAACACTCCTCTGAACCCATTTCTATTCCTCTCTCCAGGCAGCTTCTTCTGTATAAGGATACTCTCTTGGATCTTCACCAGCACACCTTGTGCTGGGGGCCAGTAAAGGCAACAGCCAGTGATCACAGGGAATATGTTCTGGTTTCTGTATAAAAGCTATGCTGGTAGAAAATAAAAAATAAATAAAATCAGGAAAACCTCTTAAATAATAACTCCGTTCTTATTTGTTAACGATGCATCTCATAGTAGGAAATGAGTCATTCTTGCTGTCATTTTTTTCCTTGTTTTTAAG
Seq C2 exon
ACCCCTCGTACTACGTGGGTCTTGCAATGGCCTGGCCAGGTGACCATTGTTGGCTGTCAGATTTTCTGGACAAAGGAGGTGTCTGAAGCTCTGGAATCAGGAGATTTGGCCAGCAGGCTTTTCCCACAGCTGAGTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(14.1=96.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCAGGAGGATCTGCAGA
R:
CTCAGCTGTGGGAAAAGCCTG
Band lengths:
310-811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]