RnoINT0048578 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7379818-7380256:-
Coord C1 exon
chr16:7380077-7380256
Coord A exon
chr16:7379959-7380076
Coord C2 exon
chr16:7379818-7379958
Length
118 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TGCTCATGTTGTCTTTCCAGATG
3' ss Score
10.81
Exon sequences
Seq C1 exon
CTGCTGTTCCAGGAGGATTTGGAGATCACACACATGTATTCGGCAGAGGGGGAAGAGGTGAAGCTGTCCTTCTCCATCTACCCCTCCAGCAATGTGGAGGACTGGCTGCTGGAGGTGGAGCGTAGCATGAAGGCCAGTGTGCACGACATCATCGAGATGGCCATCAAGGCCTACCCTACA
Seq A exon
GTGAGTGCAGCCGTCCAGCGTGCTCCCTCCTCGGTGCTCTCTGCCCCAGCCCGCAACCCAGCCAGCAAGGGTTAGAGTTGACAGCACCTGGGTCAGCCTGCTCATGTTGTCTTTCCAG
Seq C2 exon
ATGCTCAGAACTGAGTGGGTTCTGAGCTGGCCGGGCCAGGTGACCATTGCTGGTTGCCAGACATACTGGACATTGGAGGTAGCCCAGGCACTTGAGGCCAGCAGCATCAGTAGCAGCCTCTTCCCCCAGCTCTCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(14.1=96.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATCTACCCCTCCAGCAA
R:
TTTGGAGAGCTGGGGGAAGAG
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]