GgaINT0019508 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2922032-2922513:+
Coord C1 exon
chr12:2922032-2922181
Coord A exon
chr12:2922182-2922352
Coord C2 exon
chr12:2922353-2922513
Length
171 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCTT
5' ss Score
1.79
3' ss Seq
TGCTTTTGTGTCCGATACAGACC
3' ss Score
8.2
Exon sequences
Seq C1 exon
GAGAAGGTGAACGGCCTGGAGGTGGCCAAGCTGAGCGACCGGGACTTCCTCTGCAGTCTGGAAAAAGCCATTACTTATGGGAAGCCCTTCCTGCTGGAGAACGTTGGCGAGGAGCTGGACCCAGCCCTCGAACCCATCCTGCTCAAACAG
Seq A exon
GTCCTTTGGCTTGCTGTCGTGGCCAGGCTGGAAGCGGGGCTCTGCCAGCAGCTCTGAGCCGCTCCGTGCATCTCCTCAGGCTCTCTCCTCGCTGCAGAGCAGAGGGCACGCGGGATGCCTTCTCTCCCAAGAATGGATGTCCCAGCCTTTCTGCTTTTGTGTCCGATACAG
Seq C2 exon
ACCTACAAACAGCAAGGCAGAACGGTGCTGAAGCTGGGGGATGCGGTGATCCCTTACCACGAGGATTTCAAGCTGTACATCACCACCAACCTGTCCAACCCCCATTACAGCCCCGAGGTTTCCACAAAACTCACCCTCATCAACTTCACCATCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.0=100)
A:
NA
C2:
PF127812=AAA_9=FE(22.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGTGAACGGCCTGGAG
R:
TGTAATGGGGGTTGGACAGGT
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]