RnoINT0048618 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7353060-7353464:-
Coord C1 exon
chr16:7353315-7353464
Coord A exon
chr16:7353221-7353314
Coord C2 exon
chr16:7353060-7353220
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GCCCATCTTACCTACTACAGACG
3' ss Score
5.62
Exon sequences
Seq C1 exon
GAGAAGGAGAGTGGGCTAGATGTGTTCAAGCTGAGTGACCGCGACTTCCTGCGCAGCATGGAAAACGCTATCCGCTTTGGCAAGCCTTGCCTTCTGGAAAATGTGGGTGAGGAGCTGGATCCCGCACTGGAGCCCGTGTTGCTTAAGCAG
Seq A exon
GTAGGCCTGTGGGGAAGGGGAAGCCACGGACTGCAGGCCCGAACAAAGAGCTGTCCTCACTCCAACCACTGCCGGCCCATCTTACCTACTACAG
Seq C2 exon
ACGTACAAGCAGCAAGGGAACACAGTCCTGAAGTTGGGAGACACAGTGATCCCCTACCATGAGGACTTCAGGATGTACATTACCACCAAGCTGCCCAACCCTCACTATTCACCAGAGGTCTCCACCAAACTCACCCTCATCAACTTTACACTGTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.3=100)
A:
NA
C2:
PF127812=AAA_9=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGGGTGAGGAGCTGGAT
R:
AGTTTGGTGGAGACCTCTGGT
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]