GgaINT0019523 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3102226-3103074:+
Coord C1 exon
chr12:3102226-3102432
Coord A exon
chr12:3102433-3102839
Coord C2 exon
chr12:3102840-3103074
Length
407 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AGGCCCACTCTCTTCCACAGGTG
3' ss Score
8.72
Exon sequences
Seq C1 exon
GCCTACCCATCACTGAAGCCCTTGGCATCCTGGGTGAATGACTTGGTGCAGCGGGTTGAATTCCTCCAGAAGTGGATCGGCCACGGGATCCCCTCTGTGTTCTGGATCAGTGGGTTCTTCTTCCCTCAGGCCTTTCTCACTGGCACGCTGCAGAACTTCGCTAGGAAGTCTGTCATCTCCATTGACAACATCTCATTTAGCTTCAAG
Seq A exon
GTAAGGGAGTCAGACAGGGGTTTTTTTTTGCTGGATTTCTTTAGAATTTGCTGCCTGGCCCCAAAGGCAGCAGCTCTAGGCCCGACCTGCCCAAGAGGGGGAACCAGTAGCTGCACATCCCATCTCCCCCTGTGTGCCAGATACATCCGCCCACAGCACGGATGCGTCCATGACCAGAGACCTCTCCGTCTCCCCAGACCTGCTCACACCCCTCCTCCACAGGCTTTTCCTCAGGCTGCCCCACACCCTCGTGATGTGAGCTGCTGGAAAACCCATCCCAGAGATATCTGAGAGCTGGAGCAGGCTCCCCTTCGGTAGCTCTGCCTTGGCCAAGAGCAGAGTAAGGGGCTTCGCAGGTCATCAAGGCCGAGCCTTGCTCACAGCCCCAGGCCCACTCTCTTCCACAG
Seq C2 exon
GTGATGAAGGAATCAGCCAGTGAGCTATCTCGCCCTCCCTCTGAAGGCTGCTACATCCATGGCTTGTTTCTTGAGGGTGCCCGCTGGGACACGTCTGCGTTTCAGCTGGCGGAGTCCCGCCCCAAGGAGCTGTACAGTGAGATGGCTGTCATCTGGCTGCTTCCCGTCGCCAATCGCAAGCCTCCAGCTGCTGGCATATACCTCTGCCCTATCTATAAGACGCTCACTCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:77
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCCTCTGTGTTCTGGA
R:
CTGCACGAGTGAGCGTCTTAT
Band lengths:
357-764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]